Gene detail

Gene detail information of Glyur000060s00004780.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01710.1	7.00E-121	Acyl-CoA thioesterase family protein
NR	XP_003521006.1	0	PREDICTED: acyl-coenzyme A thioesterase 8-like [Glycine max]
COG	YP_002601893.1	6.00E-43	protein TesB [Desulfobacterium autotrophicum HRM2]
Swissprot	tr\|Q6H9K0\|PGLR2_PLAAC	2.00E-102	Exopolygalacturonase (Precursor; Fragment)
trEMBL	tr\|I1JK89\|I1JK89_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G01210.1}

Sequence

Transcript Sequence

>Glyur000060s00004780.1
GAATTTGGGGAGGAGATCTGGTGTGGGCCACCGCGTCGTAAAAGTCCTGCAACCGCCGACCACCGTTATTCACGTGGACGCCGAGTTTTTACACTCGGTTCACACAACACCGCACACCCATCATCCCCGTCGGTGCATCCCTATTGGTCCAACCTCCACTGGTCCACGCTTTGACACTACACAGCCGCACACCGGATCCCATCCCCCTTCCCTACCATGCCATGCACACCTATATTCATTTATATATATTGTCAGAAGTGGGTGGGAAATGGAAAAAGATATCGAGCGTGCCAATAAAAGAAATTCCTGAAACCGAAGAAACTGGTTTCGCTCTGTCAAAAATGGACCACAACGAGGAAGTGTTTGAGTTTCTCGGATGCGTTCCCCTTCTTCAGAGGCTCCCTAGCTCGTCCATAAGGAATATATCTCAGCTTGTGGTTGCCAAACACTATGAGCCAGGGGAATATGTTGTTCGTGAGGGTGAACCAGGGGATGGCGTTCATTTCATATGGGATGGAGAGGCTGAGGTTGTTGGATCTGTTAGTGCCAATGATGAAAATCGTCCAGAGTTCCAATTGAAAAAATATGACTACTTTGGTTATGGTTTGTCGAATACAGTTCACCAGGCTGATGTTGTTGCTTTGTCTAAGCTGACATGCTTAGTGCTGGCCCATGAGCACTTAGCACTGCTATCGCCAAAGTCTATCTGGAGTGCAGAAAACTGTATTGAGAGATGCTCACCTGTAGATGTCTTCCAAGGAATCACCCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGACAGATGGTTGGACAGGCACTAGCTGCAGCATCAAAATCTGTTGATCGTCTCAAGTTAGTTCATAGTTTGCATGCATATTTTCTTCGTATAGGGGATTTAAACATGCCTATTATGTATCAAGTTCACCGTCTCCGGGATGGAAAGAGCTTTGCTACGCGGAAAGTGGATGCAATTCAAAAGGGAAATGTCATATTCACTTTGCTGGCTTCATTTCATAAAGAAGAATCAGAGTTTGACCACCAGCAACTTCTTGCAATGGAAGAGCTACGAGAGAGACGTCTTATTGACCCTCGCTTGCCAATGAACAAAGTGGCTACAACTGAGTTCATCCCCTGGCCCATAGAGATACGGTTCTGTGAATCTAGAGTTGCAACAAATCAGACAAAATCTCCTCCCAGTTTGAGATACTGGTTTCGAGCAAAGGGAAAACTTTCAGATGATCAGGCCTTGCATAGGTGTGTGGTGGCATATGCTTCAGATTTAATATTTCTTCAAGTAAGTTTGAATCCTCATCGTGGGAAGGGTTTCAGGGCACGTGGTGTTAGTCTGGACCACTCCACGTGGCTTTGTCACAGGTCAAATGTTCAATCAGAAGGGAGAGTTTGGACTGCACAAGCACAGCTTAAAGTCAAGCTTTTCAATGTGAAAGACTATTATGGTGCAATTGCAGATGGCAAGACAGACAACAGAGTGGCATTTTTGAAAGCATGGAGTGATGCATGCAAATGGGATGGCAAGGCAAATATTTTGATCCCAGAAGGAACTTACATGCTCAATGAGGTCATATTCAATGGTCCATGCAATGGTTGGACAAACTTTGAAATAAAAGGGGTTCTGAAGGCTCCAATTGATCCCTCTTCATACACCACTCAGAACTGGATAAATTTCAGGTATGTCAACCAATTGATTGTGGGTGGTGGTGGCTCATTGGATGGTCAAGGATCTTCTGCTTGGGCAAGCAATGACTGCAACAAGAATCCAAATTGTCACCCTCTTCCTACAACAATGAAATTTGACTTCATCACCAACGGTTATGTCCATCACTTGAATTCTATTAACAGCAAACAGAACCATTTTGTGATATATGGGTGTGAGAACATGACCTTTACAGAACTAAAGATATCAGCCCCTGCTGATAGCCCCAACACAGATGGCATCAAAATAGGGTCATCAAATGGGGTAAACATCACTAGTGTGCAAATTGGCACTGGTGATGACTGCATTGCCATCCTTTCTGGTACCAGGAAGGTTTGGGTTTCAGATGTTTTCTGTGGTCCTGGTCATGGAATTAGTGTTGGAAGCCTTGGTAAAAATGATGGGGAGGAAGGTGTTGATGACATAGTTGTGAAGAATTGCACCCTTAGTGGTACAATTAATGGTGTTAGAATCAAAACATGGGCATGGGCTTCTAAATTGAGCAAAACTTTAAAGGCTTCTAATTTTGTCTATGAAGATATTGTGGTGAAGAATGTGGATCACCCCATTATCATTGATCAAGATTATTGTCCACACCCTCCTTGCAACAACAAGGTGGCTTCAAGTGTACAAATCAGCAATGTGACATACAGAAACATTAAAGGAAGTGGCAACACAGAAATTGCAGCCAGTTTCAATTGCAGTGAAATTAAGCCATGCCAAAACATTAGAGTGGAGAACATTGATTTGTGGCGTTATGGTGGTAAAGGAAGGCTAAGCAATTGGTGTTCCCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00060	425249	441596	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01068	ACOT1_2_4	EC:3.1.2.2	Fatty acid elongation	map00062
			Fatty acid elongation	map00062
			Biosynthesis of unsaturated fatty acids	map01040
			Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000060s00004780.1	PF00027.24	cNMP_binding	75	154	9.40E-10
Glyur000060s00004780.1	PF13622.1	4HBT_3	190	369	1.10E-25
Glyur000060s00004780.1	PF00295.12	Glyco_hydro_28	436	754	1.50E-97

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.072
SRR1783600	control	1.025
SRR1783602	moderate drought stress	0.582
SRR1811619	moderate drought stress	0.587

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.041
DRR006520	Root Summer glycyrrhizin high producing strain	0.037
DRR006521	Root Winter glycyrrhizin high producing strain	0.061
DRR006522	Root Winter glycyrrhizin high producing strain	0.003
DRR006523	Root Summer glycyrrhizin low producing strain	0.965
DRR006524	Root Summer glycyrrhizin low producing strain	0.890
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.542
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.655

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.418
SRR2868004	Drought Stress (root)	4.924
SRR2967015	Control (root)	5.947

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.431
SRR9715740	Leaf	4.143
SRR9715741	Leaf	8.796
SRR9715739	Root	0.354
SRR9715742	Root	1.639
SRR9715743	Root	1.068

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.398
SRR8749028	MeJA induced 9h	2.672
SRR8749029	MeJA induced 9h	2.349
SRR8749030	Uninduced	3.177
SRR8749031	Uninduced	2.014
SRR8749032	Uninduced	2.813

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.417
SRR8400027	Control - Root	3.217