Gene detail

Gene detail information of Glyur000060s00004777

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23340.1	1.00E-107	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_007135063.1	0	hypothetical protein PHAVU_010G098400g [Phaseolus vulgaris]
COG	NP_248837.1	1.00E-39	oxidoreductase [Pseudomonas aeruginosa PAO1]
Swissprot	tr\|Q9C971\|G3OX4_ARATH	7.00E-42	Gibberellin 3-beta-dioxygenase 4
trEMBL	tr\|V7AN26\|V7AN26_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW07057.1}

Sequence

Transcript Sequence

>Glyur000060s00004777.1
ATGTCCACCAAGTCCANCCCTTTTGCTGAGCTTCCTATTATAGACATTTCTGAGCCATTACAGCCATCTTCTTTAGCCTCTCTCTATAAAGCCTGCAAAGATTGGGGATTCTTCCACATAATCAACCATGAAATCTCCAAAGATCTTTGCAGCCAGCTCCATTCACTATCCAAACACTTTTTCAACCTCCCTTCTGATACCAAACTTAAACTTGGCCCTTTCTCCTCTATAGGATCTTATACCCCTCACTTCATTGCTTCTCCATTCTTTGAGAGCCTCCGGATTGATGGCCCCAACTTCTATGTTTCTGCTAAGAACTCTGAAGATATCCTGTTTGACAAACAGAATTCCAAATTCAGTGAGACACTGCAGGAATATTGTGGCAAGATGGCAGATTTGTCTGAGAGAATTCTGAAGCTTGTGTTGATGAGCTTAGGGGATGGCTTTGATAACTTGTTTTATGATTCAGAATTCAAGAAGTGCCATGGTTACTTGAGGATAAACAACTACACTGCCCCAGAAAGTTTGGAAGATCAAAATCAAGTCGAGGGGCTTGGGATGCATACTGATATGAGCTGTATTACTATCCTATACCAAGATGAAATTGGGGGGCTTCAGGTGAGATCACATGAAGGAAAGTGGATAGACATAAGCCCTTCCGAGGGGACCTTAGTGGTGAACATAGGTGATATGATGCAAGCTTGGAGCAATGATAAGTTAAGGTCTTCTGAACATAGAGTTGTTTTGAAGCAGCCTGTGAACAGGTTCTCCCTTGCTTTCTTTTGGTGTTTTGAGGATGAAAAGGTGGTCTTGGCACCAGATGAGGTGGTTGGAGAAGGAAACAAGAGGGTGTACAACCCTTTTGTGTGCTCAGACTATCTGAAATTCAGAGAGAACAACCAAAGAGGAAGGTTTGAAAAGGTTGGTTACACAGTCAGGGATTTTGCTGGGGTCATCAAGTCTCAAAGTACTGTAAATGGTCACAAAAGTACTGGAAACCAATTCATCACAGCAGATAATAATAGTTTATGCTTGCTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00060	414920	416061	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000060s00004777.1	PF14226.1	DIOX_N	11	71	2.50E-17
Glyur000060s00004777.1	PF03171.15	2OG-FeII_Oxy	164	263	1.50E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.070
SRR1783600	control	0.073
SRR1783602	moderate drought stress	0.037
SRR1811619	moderate drought stress	0.036

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.213
DRR006522	Root Winter glycyrrhizin high producing strain	0.260
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.178
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.178

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.728
SRR2868004	Drought Stress (root)	9.693
SRR2967015	Control (root)	8.147

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.205
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.215
SRR9715739	Root	0.362
SRR9715742	Root	1.074
SRR9715743	Root	1.257

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.124
SRR8749031	Uninduced	0.078
SRR8749032	Uninduced	0.055

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.177
SRR8400027	Control - Root	1.890