Gene detail information of Glyur000060s00004774 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01700.1 | 5.00E-154 | RHO guanyl-nucleotide exchange factor 2 |
| NR | XP_003521141.1 | 0 | PREDICTED: rop guanine nucleotide exchange factor 3-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LQ89|ROGF2_ARATH | 0 | Rop guanine nucleotide exchange factor 2 |
| trEMBL | tr|I1JKB4|I1JKB4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G01560.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 387934 | 392074 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004774.1 | PF03759.8 | PRONE | 116 | 410 | 5.00E-141 |
| Glyur000060s00004774.1 | PF03759.8 | PRONE | 413 | 452 | 1.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.544 |
| SRR1783600 | control | 1.639 |
| SRR1783602 | moderate drought stress | 1.206 |
| SRR1811619 | moderate drought stress | 1.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.881 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.728 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.073 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.614 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.667 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.521 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.248 |
| SRR2868004 | Drought Stress (root) | 6.889 |
| SRR2967015 | Control (root) | 9.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.838 |
| SRR9715740 | Leaf | 2.060 |
| SRR9715741 | Leaf | 1.215 |
| SRR9715739 | Root | 0.119 |
| SRR9715742 | Root | 0.912 |
| SRR9715743 | Root | 0.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.508 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.069 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.112 |
| SRR8749032 | Uninduced | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.464 |
| SRR8400027 | Control - Root | 4.746 |