Gene detail

Gene detail information of Glyur000060s00004758.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61415.2	1.00E-104	SKP1-like 21
NR	XP_007135087.1	0	hypothetical protein PHAVU_010G099600g [Phaseolus vulgaris]
Swissprot	tr\|Q8LF97\|ASK21_ARATH	7.00E-150	SKP1-like protein 21
trEMBL	tr\|V7AS95\|V7AS95_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW07081.1}

Sequence

Transcript Sequence

>Glyur000060s00004758.1
AGTTTGACCAAAAAAAAAAAAGAGAGTCCCTATTCCGTTCACTTTGTCATTTTTCTCATTGAAAACGATTTCAACTACAAAGGCACTAGAGTGAAAATTTCCCAGTCACAAAAANTGCCAACTCCCATTTTTCTCTTTCTTTTCCATTTCATTCAGTTTTGTCACTCTACAAATCTATTTATCCGCGCTTGCAGCAGGTGTGAAATCATTCTCCATTCTGATATTTGACAAGTACACACCTATTTAACTTACTGCTTGAAATATTATGATACAGAGATTTGTGTAGCATTGCAAATTCTTCGTGGTCCTTGTGCTCGAGTAACACAATCCTGAATGCAGAAGTCCCTTGACAGGAGGACATATTAAGTGGTTGTTTGGAAGTTTGAATTTGCGCCATAAAACACTTTCAATATCCACATATTTTGCATTTCAAATTGTTCTCAGATGTCAGAAATTGACATGGCAGTTATCAAACCTGAGATGATGAAGCCTTATGTGTGGCTTCAAACTTCTGATGATTCTATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTGATATGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAGGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCCATGTTGAACTTAATTCTTGATTATTGTCGATTTCATCAAGTACCAGGCCGCTCAAACAAGGAGAGGAAGTCTTATGATGAGAAACTCGTTAGGATAGATACGGAGAGGCTCTGTGACCTTCAGTTAAAGCCATTGGTTGATCTTACCAGTCGTGCACTTGCTCGAATAATTGAAGGAAGAACACCGGAGGAGATACGTGAGATATTTCATTTGCCTGATGATCTTACAGAGGTGTCTGGTGCTTGTGAGAACTCTGAAGAGAAATTGGAGCCCTTGAGAAACATAACTGATGACCCAAGGATCAGGCTTTTGAACCGTCTGTATGCCAAAAAGAGGAAAGAACTGAAAGAGCGTGACAGGTTAAAGAATGTTGAAGTTGAAGAAGAGCATGTAGATGAACGTTCAGTCGATGACCTTTTGTCTTTTATTAATGGAAATGATGGAGATCCAAAAGGGACTAAAACTTCCAAGAATAAAAAGAAGAACCGAAGGAAAAAAGAACAGAAGAACTCTTCTTTGAAGGAATCATCTGAACTGAATAAGAAGGGGATAAACGGTCATAACATCAGACACCAAAGTTCTGGAGCTGATAGAACCGGCGAGACCTCAGATTTACACTATACAGAAGATGATGCCTGTACTCCTAAGGCTGAGTTTGATGATGGTGATATAGATGATGAGATCGATCCCGCGTTAAAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAGAGAATGCAAGAATTTTTGTCCTCAGGACAAGAAAGGAAGACAATGCTCTTTGCTACCAATGGGAATGGTTTTCTAAGGCGACATGCTTGTATGTTTTTCCATGACTGGACTCGGAATGGGAATGAGTCCTTTACCAGATGGCCATTGGCTTGAACAATTTTGAGCGATGCTGGCAAGCGCAAGAAAAGTGTTGCATGTCAGTCATTTTACTTTTTTCGCATTTGTTTTGTTTTTGAGTGCGTTTAATGCATACTGAGGCAAAGTACAGACAAAACAGTACATGATAAACACTTGAGTTATAGCACAATTCTGTAATATATATTGTTTGGTGGTGAATACATAAGAAAAATAATGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00060	305725	311461	+

Gene family

Gene family	subfamily
Ubiquitin Family	SKP1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000060s00004758.1	PF01466.14	Skp1	91	144	6.60E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.220
SRR1783600	control	3.319
SRR1783602	moderate drought stress	3.961
SRR1811619	moderate drought stress	3.901

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.130
DRR006520	Root Summer glycyrrhizin high producing strain	6.961
DRR006521	Root Winter glycyrrhizin high producing strain	3.482
DRR006522	Root Winter glycyrrhizin high producing strain	3.462
DRR006523	Root Summer glycyrrhizin low producing strain	5.575
DRR006524	Root Summer glycyrrhizin low producing strain	5.462
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.611
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.447

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.832
SRR2868004	Drought Stress (root)	8.086
SRR2967015	Control (root)	7.822

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.268
SRR9715740	Leaf	17.623
SRR9715741	Leaf	18.858
SRR9715739	Root	0.769
SRR9715742	Root	2.868
SRR9715743	Root	2.288

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.951
SRR8749028	MeJA induced 9h	4.479
SRR8749029	MeJA induced 9h	3.474
SRR8749030	Uninduced	4.777
SRR8749031	Uninduced	0.945
SRR8749032	Uninduced	0.945

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.436
SRR8400027	Control - Root	8.489