Gene detail

Gene detail information of Glyur000060s00004757

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80750.1	8.00E-67	Ribosomal protein L30/L7 family protein
NR	XP_004512828.1	7.22E-147	PREDICTED: 60S ribosomal protein L7-1-like isoform X1 [Cicer arietinum]
COG	NP_579532.1	2.00E-13	50S ribosomal protein L30 [Pyrococcus furiosus DSM 3638]
Swissprot	tr\|Q9SAI5\|RL71_ARATH	3.00E-82	60S ribosomal protein L7-1
trEMBL	tr\|G7L2C7\|G7L2C7_MEDTR	1.00E-140	Uncharacterized protein {ECO:0000313\|EMBL:AFK42755.1}

Sequence

Transcript Sequence

>Glyur000060s00004757.1
CCTCCCTCTACTGGTTTCTTCTGCTTTCGGCTTCAAAACTCAGAGAAACCCAACACAGCGAGCGACACCACCTCTTTTCAGTGAAGAATATAAAAGATGGCTGAAGAGGATCCAAAGCCTCTCAACTATATTCCAGAAGTTATATTGAAAAAGAGGAAAAGTAGCGAAGCATATGCCTTGAGAAAAAAGGCACAGTTCCAGCAGAAAAATTTCAAATCCAGGAAGACCAAGGACTTCATCAAAAAGCCTGAGGATTTCGTTTTTGAATATCGCAATCAGGAGCTGGACCTTATTAGAATGAAACGGAGGGTCAAGAGGAAACTACCAGAAAAATTGACCCCAGACTCCAAGCCCATAATAATCATTCGGATACANGGGACAAATGACATGCATCCTAAAACCAGAAAAGTCTTGTACAGCTTGGGGTTGAGAAGAATATTCAGTGCTGTCTTTGTGAAGCCAACTGAGGGAGTAATGGCCAAGCTGCAGAGAGTGGAACCATATGTTACCTATGGATATCCAAATCTCAAAAGCATAAAGGAGCTAATTTACAAGAAGGGACATGCGAGAATAGATAAGCGAAAAGTTCCTTTGACGGATAATAACATCATTGAGCAGGAATTAGGTAAGTTTGGTATTTTATGCATAGAAGACATGGTGCATCAAATTGATAGTGTTGGTCAACACTTTAAGGAAGTTGTCAGATTTATGTGGCCCTTTGAACTCAACAAGCCNGGAGAAGGATTGAAAGGATCGAAGACCCGATTCAAGGATGGTGGAGATGCAGGGAACCGTGAGGATCTCATCAACGAGCTAATCAATAAAATGAATTAATCCCATATTCAATGTACTACCAAAATTTTGATGCCGTTTGTGATCTCCCTCACATGATCTTGGATGCAAGATCATTTCAAAGTTATTATCTGTTTGTTACTCGAAAAAAATGCTACCTACTATTGTTAAAGCTGAATTTAAATATTTAGTATCTTTGTGTGTCATTTATTATAGCAACTTCTTGTTTTCCTATTTTTGTTTCAAAGGAGAGTGTATGTTTGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00060	299471	302844	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000060s00004757.1	PF08079.7	Ribosomal_L30_N	16	75	2.50E-09
Glyur000060s00004757.1	PF00327.15	Ribosomal_L30	88	137	1.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	107.700
SRR1783600	control	108.235
SRR1783602	moderate drought stress	229.779
SRR1811619	moderate drought stress	229.267

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	267.251
DRR006520	Root Summer glycyrrhizin high producing strain	263.597
DRR006521	Root Winter glycyrrhizin high producing strain	153.379
DRR006522	Root Winter glycyrrhizin high producing strain	149.254
DRR006523	Root Summer glycyrrhizin low producing strain	254.945
DRR006524	Root Summer glycyrrhizin low producing strain	254.515
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.566
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.437

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	116.744
SRR2868004	Drought Stress (root)	118.024
SRR2967015	Control (root)	123.029

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	54.508
SRR9715740	Leaf	64.083
SRR9715741	Leaf	57.506
SRR9715739	Root	13.565
SRR9715742	Root	65.109
SRR9715743	Root	57.150

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	403.147
SRR8749028	MeJA induced 9h	198.524
SRR8749029	MeJA induced 9h	357.013
SRR8749030	Uninduced	107.196
SRR8749031	Uninduced	90.677
SRR8749032	Uninduced	148.165

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	182.079
SRR8400027	Control - Root	160.145