Gene detail information of Glyur000060s00004756 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03850.1 | 2.00E-18 | Nucleic acid-binding, OB-fold-like protein |
| NR | XP_003618578.1 | 6.42E-38 | 30S ribosomal protein S28e [Medicago truncatula] |
| COG | YP_004893693.1 | 2.00E-15 | 30S ribosomal protein S28e [Thermoproteus tenax Kra 1] |
| Swissprot | tr|P46302|RS28_MAIZE | 1.00E-35 | 40S ribosomal protein S28 |
| trEMBL | tr|C6SZ18|C6SZ18_SOYBN | 3.00E-38 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G36580.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 294936 | 296544 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004756.1 | PF01200.13 | Ribosomal_S28e | 3 | 65 | 2.40E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 110.368 |
| SRR1783600 | control | 110.446 |
| SRR1783602 | moderate drought stress | 92.119 |
| SRR1811619 | moderate drought stress | 90.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 391.137 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 385.964 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 215.032 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 211.343 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 369.804 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 367.413 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 98.151 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 96.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 258.284 |
| SRR2868004 | Drought Stress (root) | 176.196 |
| SRR2967015 | Control (root) | 154.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 106.022 |
| SRR9715740 | Leaf | 102.563 |
| SRR9715741 | Leaf | 90.306 |
| SRR9715739 | Root | 217.593 |
| SRR9715742 | Root | 120.740 |
| SRR9715743 | Root | 143.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 196.840 |
| SRR8749028 | MeJA induced 9h | 62.555 |
| SRR8749029 | MeJA induced 9h | 159.212 |
| SRR8749030 | Uninduced | 17.780 |
| SRR8749031 | Uninduced | 16.231 |
| SRR8749032 | Uninduced | 31.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 207.141 |
| SRR8400027 | Control - Root | 186.453 |