Gene detail

Gene detail information of Glyur000060s00004750.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45970.1	0	cytochrome P450, family 86, subfamily A, polypeptide 8
NR	XP_003627566.1	0	Cytochrome P450 fatty acid omega-hydroxylase [Medicago truncatula]
COG	YP_004174517.1	2.00E-34	cytochrome P450 [Anaerolinea thermophila UNI-1]
Swissprot	tr\|O80823\|C86A8_ARATH	0	Cytochrome P450 86A8
trEMBL	tr\|G7LBQ4\|G7LBQ4_MEDTR	0	Cytochrome P450 family 94 protein {ECO:0000313\|EMBL:AET02042.1}

Sequence

Transcript Sequence

>Glyur000060s00004750.1
ATGGAAACTTGTACGGCTCTACTGCTTTTAACGGCGATCACGGCGTACCTACTGTGGTTCACGTTCATCTCACGGTCGCTGAAGGGTCCACGTGTCTGGCCCCTATTGGGCAGCCTCCCGGGTCTCATTGAGAATTGTGAGCGCATGCACGACTGGATCTGCGACAACCTCCGCGCGTGTGGCGGCACGTACCAGACCTGCATCTGCGCCATCCCCTTCCTCGCCAAGCGCCAGGGCCTCGTCACCGTCACGTGCGACCCGAGGAACCTCGAACACATACTCAAGACCCGCTTCGACAACTACCCCAAGGGTCCCACGTGGCACGCCGTGTTTCACGANCTGTTGGGGGATGGGATNTTCAACTCCGACGGCGACACGTGGCTGTTCCAGCGTAAGACCGCCGCACTGGAATTCACCACCCGGACCCTGCGCCAAGCCATGTCCCGATGGGTCACCCGGGCCATCAAGGATCGGCTCTGCCCGATCCTTGAAAAAGCCGAGCTACGAGCCGAGCTGGTAGATCTACAAGACCTGATGCTCCGGCTCACGTTCGACAACATTTGCGGCCTGGCCTTCGGGAGAGACCCGGAGACCTGTGCCTCGGGTTTTCCCGAAAACCAATTCGCCACGGCTTTTGACCGAGCCACTGAAGCCACGCTCCAACGGTTCATATTGCCGGAGGTGATGTGGAGGATAAAGAAGTGGCTTCGGCTCGGGATGGAGGTCAGCTTGAGCCGAAGCCTTGTCTACGTGGACGAGCACTTGTCCAACGTGATTGAAAAGCGCAAAGTGGAGCTGCTGAGTCAACAAAAAGATGGGAGCACCCACCACGACGACTTGCTGACTAGGTTCATGAAGAAGAAGGAGTGCTACTCGGACAGGTTCCTCCAACACGTGGCGCTGAACTTCATCCTAGCTGGACGTGACACGTCATCGGTGGCGCTGAGCTGGTTCTTTTGGCTGGTGACTCAGAACCCGAGGGTGGAGGAAAAAGTCTTGCGCGAGATCTGCACGGTCCTAATCGAGACACGTGGCAATGACGTGGAAAAGTGGGTGGATGAGCCATTGGTGTTTGAGGAGGTTGACCGTTTGGTTTATCTCAAGGCTGCGTTGTCGGAGACATTGAGGTTGTATCCATCGGTGCCGGAGGATTCAAAGCACGTGGTGGCCGACGACGTGTTGCCGGACGGCACGTTTGTTCCGGCGGGATCGTCGGTGACGTATTCAATATACTCGGCGGGGAGGTTGAAGTCCACNTGGGGTGAGGATTGCATGGAGTTTAGACCCGAGAGGTGGTTGTCATTGGATGGGACAAAGTTCACCATGCATGACGCCTTTAAGTTTGTTGCTTTCAATGCTGGTCCTAGGATATGTTTGGGGAAGGATTTGGCATACCTGCAGATGAAGTCCATCGCCGCGGCGGTGCTGCTCCGCCACCGGCTTGTGGTGGTTCCTGGCCACCTGGTGGAGCAAAAGATGTCACTCACCTTGTTCATGAAGAATGGGCTCAAGGTTAATGTGTACAACAGGGATTTGAAGGGGGTTTTGGCAAGTATACAAAGAGAACGGGAGGGAGCTATTCAGGGGAAAGAGTCCACAGGTTTGAAATGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00060	278815	280428	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP86A8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15398	CYP86A4S	EC:1.14.-.-	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000060s00004750.1	PF00067.17	p450	28	499	1.60E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.002
SRR1783600	control	5.005
SRR1783602	moderate drought stress	4.982
SRR1811619	moderate drought stress	5.792

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.067
DRR006520	Root Summer glycyrrhizin high producing strain	0.067
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.344
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.342

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.398
SRR2868004	Drought Stress (root)	8.802
SRR2967015	Control (root)	12.751

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.852
SRR9715740	Leaf	1.499
SRR9715741	Leaf	1.958
SRR9715739	Root	23.539
SRR9715742	Root	15.368
SRR9715743	Root	18.394

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.728
SRR8749028	MeJA induced 9h	1.659
SRR8749029	MeJA induced 9h	2.076
SRR8749030	Uninduced	1.998
SRR8749031	Uninduced	1.990
SRR8749032	Uninduced	0.764

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.132
SRR8400027	Control - Root	16.549