Gene detail

Gene detail information of Glyur000060s00004745.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52470.1	1.00E-80	fibrillarin 1
NR	XP_011030166.1	2.88E-116	PREDICTED: probable mediator of RNA polymerase II transcription subunit 36b isoform X3 [Populus euphratica]
COG	YP_003858755.1	5.00E-53	rRNA 2'-O-methyltransferase fibrillarin [Ignisphaera aggregans DSM 17230]
Swissprot	tr\|Q9FEF8\|MD36B_ARATH	2.00E-111	Probable mediator of RNA polymerase II transcription subunit 36b
trEMBL	tr\|R0GMR7\|R0GMR7_9BRAS	1.00E-110	Uncharacterized protein {ECO:0000313\|EMBL:EOA13620.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00060	260051	262718	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14563	NOP1, FBL	EC:2.1.1.-	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

biological_process

GO:0006364 rRNA processing

GO:0008033 tRNA processing

molecular_function

GO:0003723 RNA binding

GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000060s00004745.1	PF01269.12	Fibrillarin	72	230	1.80E-76

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.005
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.042

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.194
DRR006522	Root Winter glycyrrhizin high producing strain	0.253
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.813
SRR2868004	Drought Stress (root)	0.791
SRR2967015	Control (root)	0.367

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.043
SRR9715740	Leaf	0.064
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.526
SRR9715743	Root	0.851

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.410
SRR8749028	MeJA induced 9h	0.927
SRR8749029	MeJA induced 9h	1.263
SRR8749030	Uninduced	0.074
SRR8749031	Uninduced	0.094
SRR8749032	Uninduced	0.261

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.303
SRR8400027	Control - Root	0.201