Gene detail information of Glyur000060s00004742.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46040.1 | 1.00E-71 | ARID/BRIGHT DNA-binding domain;ELM2 domain protein |
| NR | KHN26953.1 | 0 | AT-rich interactive domain-containing protein 1 [Glycine soja] |
| Swissprot | tr|Q84JT7|ARID1_ARATH | 6.00E-98 | AT-rich interactive domain-containing protein 1 |
| trEMBL | tr|V7AR42|V7AR42_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW07088.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 232164 | 235495 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ARID |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004742.1 | PF01388.16 | ARID | 60 | 116 | 2.80E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.264 |
| SRR1783600 | control | 6.292 |
| SRR1783602 | moderate drought stress | 5.362 |
| SRR1811619 | moderate drought stress | 5.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.644 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.433 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.263 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.127 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.708 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.614 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.439 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.165 |
| SRR2868004 | Drought Stress (root) | 12.440 |
| SRR2967015 | Control (root) | 11.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.749 |
| SRR9715740 | Leaf | 8.147 |
| SRR9715741 | Leaf | 6.574 |
| SRR9715739 | Root | 1.342 |
| SRR9715742 | Root | 4.221 |
| SRR9715743 | Root | 3.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.002 |
| SRR8749028 | MeJA induced 9h | 5.200 |
| SRR8749029 | MeJA induced 9h | 4.460 |
| SRR8749030 | Uninduced | 5.199 |
| SRR8749031 | Uninduced | 3.547 |
| SRR8749032 | Uninduced | 3.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.073 |
| SRR8400027 | Control - Root | 9.127 |