Gene detail information of Glyur000060s00004736 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00310.2 | 9.00E-05 | Putative membrane lipoprotein |
| NR | XP_002511891.1 | 1.39E-57 | hypothetical protein RCOM_1616170 [Ricinus communis] |
| trEMBL | tr|B9RDV2|B9RDV2_RICCO | 5.00E-58 | Putative uncharacterized protein {ECO:0000313|EMBL:EEF50560.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 178544 | 180091 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004736.1 | PF08879.5 | WRC | 123 | 149 | 4.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.084 |
| SRR1783600 | control | 1.065 |
| SRR1783602 | moderate drought stress | 1.378 |
| SRR1811619 | moderate drought stress | 1.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.178 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.455 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.807 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.787 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.099 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.798 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.499 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.705 |
| SRR2868004 | Drought Stress (root) | 3.108 |
| SRR2967015 | Control (root) | 3.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.937 |
| SRR9715740 | Leaf | 0.647 |
| SRR9715741 | Leaf | 0.925 |
| SRR9715739 | Root | 2.145 |
| SRR9715742 | Root | 0.687 |
| SRR9715743 | Root | 0.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.674 |
| SRR8749028 | MeJA induced 9h | 1.908 |
| SRR8749029 | MeJA induced 9h | 2.578 |
| SRR8749030 | Uninduced | 1.764 |
| SRR8749031 | Uninduced | 2.352 |
| SRR8749032 | Uninduced | 2.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.298 |
| SRR8400027 | Control - Root | 5.016 |