Gene detail information of Glyur000060s00004728 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58260.1 | 3.00E-54 | oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor |
| NR | XP_003600578.1 | 1.49E-99 | NAD(P)H-quinone oxidoreductase subunit N [Medicago truncatula] |
| trEMBL | tr|G7IV78|G7IV78_MEDTR | 6.00E-100 | NADH-quinone oxidoreductase cyanobacterial subunit N {ECO:0000313|EMBL:AES70829.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 127296 | 128468 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004728.1 | PF11909.3 | NdhN | 93 | 138 | 3.10E-17 |
| Glyur000060s00004728.1 | PF11909.3 | NdhN | 136 | 201 | 8.00E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.480 |
| SRR1783600 | control | 0.479 |
| SRR1783602 | moderate drought stress | 0.193 |
| SRR1811619 | moderate drought stress | 0.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.169 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.175 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.350 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.188 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.136 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.073 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 236.189 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 228.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.594 |
| SRR2868004 | Drought Stress (root) | 7.907 |
| SRR2967015 | Control (root) | 2.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 138.017 |
| SRR9715740 | Leaf | 163.577 |
| SRR9715741 | Leaf | 116.864 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.084 |
| SRR9715743 | Root | 0.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.392 |
| SRR8749028 | MeJA induced 9h | 0.422 |
| SRR8749029 | MeJA induced 9h | 0.451 |
| SRR8749030 | Uninduced | 0.088 |
| SRR8749031 | Uninduced | 0.038 |
| SRR8749032 | Uninduced | 0.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.404 |
| SRR8400027 | Control - Root | 4.044 |