Gene detail information of Glyur000060s00004726 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58250.1 | 1.00E-60 | |
| NR | KHN24703.1 | 8.85E-121 | Hypothetical protein glysoja_029772 [Glycine soja] |
| Swissprot | tr|P51204|YCF54_PORPU | 1.00E-12 | Uncharacterized protein ycf54 |
| trEMBL | tr|I1LM02|I1LM02_SOYBN | 5.00E-120 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G31660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 120063 | 125459 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004726.1 | PF10674.4 | Ycf54 | 159 | 249 | 2.50E-29 |
| Glyur000060s00004726.2 | PF10674.4 | Ycf54 | 159 | 249 | 2.20E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.809 |
| SRR1783600 | control | 13.976 |
| SRR1783602 | moderate drought stress | 21.037 |
| SRR1811619 | moderate drought stress | 20.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.694 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.298 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.740 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.048 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.863 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.442 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 55.389 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 55.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.228 |
| SRR2868004 | Drought Stress (root) | 8.459 |
| SRR2967015 | Control (root) | 10.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 68.521 |
| SRR9715740 | Leaf | 84.943 |
| SRR9715741 | Leaf | 53.385 |
| SRR9715739 | Root | 14.652 |
| SRR9715742 | Root | 12.051 |
| SRR9715743 | Root | 11.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.340 |
| SRR8749028 | MeJA induced 9h | 11.904 |
| SRR8749029 | MeJA induced 9h | 7.001 |
| SRR8749030 | Uninduced | 12.125 |
| SRR8749031 | Uninduced | 4.650 |
| SRR8749032 | Uninduced | 7.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.448 |
| SRR8400027 | Control - Root | 17.603 |