Gene detail information of Glyur000060s00004725 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54210.1 | 2.00E-64 | Ribosomal protein L17 family protein |
| NR | NP_001236786.1 | 5.56E-106 | uncharacterized protein LOC100500099 [Glycine max] |
| COG | YP_007108356.1 | 1.00E-51 | 50S ribosomal protein L17 [Geitlerinema sp. PCC 7407] |
| Swissprot | tr|O80363|RK17_TOBAC | 4.00E-93 | 50S ribosomal protein L17, chloroplastic (Precursor) |
| trEMBL | tr|C6T088|C6T088_SOYBN | 2.00E-106 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G05600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 116998 | 118947 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004725.1 | PF01196.14 | Ribosomal_L17 | 115 | 211 | 1.80E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 59.007 |
| SRR1783600 | control | 58.326 |
| SRR1783602 | moderate drought stress | 36.579 |
| SRR1811619 | moderate drought stress | 36.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.436 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 39.913 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.088 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.014 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.276 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.883 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 242.334 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 241.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.955 |
| SRR2868004 | Drought Stress (root) | 22.151 |
| SRR2967015 | Control (root) | 22.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 141.540 |
| SRR9715740 | Leaf | 158.375 |
| SRR9715741 | Leaf | 115.018 |
| SRR9715739 | Root | 44.083 |
| SRR9715742 | Root | 28.565 |
| SRR9715743 | Root | 29.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.331 |
| SRR8749028 | MeJA induced 9h | 12.231 |
| SRR8749029 | MeJA induced 9h | 10.553 |
| SRR8749030 | Uninduced | 5.043 |
| SRR8749031 | Uninduced | 1.765 |
| SRR8749032 | Uninduced | 1.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.258 |
| SRR8400027 | Control - Root | 42.884 |