Gene detail

Gene detail information of Glyur000060s00004721

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G10360.2	4.00E-67	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
NR	XP_004500412.1	1.89E-139	PREDICTED: transmembrane protein 56-like isoform X1 [Cicer arietinum]
trEMBL	tr\|K7MPZ7\|K7MPZ7_SOYBN	3.00E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G05527.3}

Sequence

Transcript Sequence

>Glyur000060s00004721.1
CGAGAGACTATTTTTGCGTTGAAAATTAAAACGGCTCACCGTTCATTAACTACGCTTTCTTCTCCTTCGTCCTTTTTGTGGGCTCATTTTCTGCTCAGGTCCGAACTGACACTCACTCACTCTCTTTCTCTCTCTCCGTGACCGTGACTGTGTTGTGTGTAGTTTGGTTTGATTTTGTGATTCTCAACAAGGAGATTGGATGGGAATTCCTTTTCCTTTTGGTCTCTTGGCTGCTGCTGATGTTTCCTCTTATGACTTTGTTGCTGCTCCAAGCAAAGAAATTCAATGGCTGGGGTCTGTCTTAACCGGTATCATCTTCAGTGTTATGGTTTATAGATTGACTGCTACTTTTAGTTCTCTATTGTTCACGGGATATGGCAAATTGAGCAGTGCTGAGAAAATTGAATGGAATAACCGGGGATTCTCAACATTTCATGCTCTTTTTGCATCATTTACGTCATTTTACCTCTTGATGCTATCAGATCTCTTCAAAGACGATTCACAAGAAAAGCTAGTTGTTAATAGATCATCTACTNTCTCAAATTCAGTATTGGGGGTTCTACACCATGGACTGTCCATGTTTTCAATTATCCAAGCTTTGCTAAGTGGTCAAGCACAGATCTACATATTAATGGTTCTGTTCTCCGAGAGCACAACTCCTTTTGTAAATCTAAGATGGTACTTGGATATCGCTGGTCTTAAGAGCTCCAAACTTTACATCTTCAACGGCGTTGCGTTGTTCCTCGGGTGGTTGGTAGCAAGGATTTTCTTGTTCATGTTCTTTTTTATCCACATGTGGACCCATTTTGATGAGGTCAAGCAGGTCTTCCCAATGGGTTTCTACAGCTTGCTTGTGGTGCCTCCTGTGTTGTCAATGATGAATGTATTTTGGTTCTGGAAGATTGCCAAGGGTATGGTCAAAACTCTTTCAAAAGCAAAACAACATAGCAAGTGATCCCACTACATTTCATGCTGCTGCTCTACTCGATGCATGAAGTGGCCATTGAATTGCTTCAGTACAGTTGCAATCAACATTTTTTGTTCACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00060	90052	95123	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000060s00004721.1	PF03798.11	TRAM_LAG1_CLN8	117	237	1.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.449
SRR1783600	control	13.832
SRR1783602	moderate drought stress	10.034
SRR1811619	moderate drought stress	9.811

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.397
DRR006520	Root Summer glycyrrhizin high producing strain	21.309
DRR006521	Root Winter glycyrrhizin high producing strain	10.804
DRR006522	Root Winter glycyrrhizin high producing strain	10.097
DRR006523	Root Summer glycyrrhizin low producing strain	22.440
DRR006524	Root Summer glycyrrhizin low producing strain	21.961
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.167
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.318

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.692
SRR2868004	Drought Stress (root)	41.913
SRR2967015	Control (root)	37.607

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.169
SRR9715740	Leaf	21.514
SRR9715741	Leaf	26.072
SRR9715739	Root	14.574
SRR9715742	Root	20.245
SRR9715743	Root	18.547

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.161
SRR8749028	MeJA induced 9h	21.347
SRR8749029	MeJA induced 9h	8.540
SRR8749030	Uninduced	10.705
SRR8749031	Uninduced	6.003
SRR8749032	Uninduced	3.140

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.333
SRR8400027	Control - Root	49.601