Gene detail information of Glyur000060s00004714 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65690.1 | 1.00E-57 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_007146942.1 | 5.22E-134 | hypothetical protein PHAVU_006G083600g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SJ52|YLS9_ARATH | 3.00E-21 | Protein YLS9 |
| trEMBL | tr|V7BQT4|V7BQT4_PHAVU | 2.00E-134 | Uncharacterized protein {ECO:0000313|EMBL:ESW18936.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 63132 | 63884 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004714.1 | PF03168.8 | LEA_2 | 121 | 225 | 7.70E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.429 |
| SRR1783600 | control | 38.258 |
| SRR1783602 | moderate drought stress | 38.412 |
| SRR1811619 | moderate drought stress | 37.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.173 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.252 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 105.452 |
| SRR2868004 | Drought Stress (root) | 141.659 |
| SRR2967015 | Control (root) | 126.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.562 |
| SRR9715740 | Leaf | 9.243 |
| SRR9715741 | Leaf | 9.738 |
| SRR9715739 | Root | 32.272 |
| SRR9715742 | Root | 20.828 |
| SRR9715743 | Root | 19.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.235 |
| SRR8749028 | MeJA induced 9h | 43.836 |
| SRR8749029 | MeJA induced 9h | 17.675 |
| SRR8749030 | Uninduced | 186.497 |
| SRR8749031 | Uninduced | 71.231 |
| SRR8749032 | Uninduced | 20.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 60.793 |
| SRR8400027 | Control - Root | 48.726 |