Gene detail information of Glyur000060s00004711 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11950.1 | 3.00E-106 | Transcription factor jumonji (jmjC) domain-containing protein |
| NR | XP_003537382.1 | 0 | PREDICTED: uncharacterized protein LOC100808936 isoform X1 [Glycine max] |
| Swissprot | tr|Q9SSE9|JMJ25_ARATH | 3.00E-95 | Lysine-specific demethylase JMJ25 |
| trEMBL | tr|K7LR91|K7LR91_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G31863.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 43915 | 56807 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Jumonji |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004711.1 | PF08879.5 | WRC | 8 | 49 | 7.40E-10 |
| Glyur000060s00004711.1 | PF02373.17 | JmjC | 909 | 1006 | 1.60E-13 |
| Glyur000060s00004711.2 | PF08879.5 | WRC | 8 | 49 | 7.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.912 |
| SRR1783600 | control | 6.084 |
| SRR1783602 | moderate drought stress | 8.893 |
| SRR1811619 | moderate drought stress | 8.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.640 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.110 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.436 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.328 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.395 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.908 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.222 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.350 |
| SRR2868004 | Drought Stress (root) | 7.451 |
| SRR2967015 | Control (root) | 8.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.048 |
| SRR9715740 | Leaf | 3.166 |
| SRR9715741 | Leaf | 2.703 |
| SRR9715739 | Root | 0.835 |
| SRR9715742 | Root | 4.996 |
| SRR9715743 | Root | 3.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.046 |
| SRR8749028 | MeJA induced 9h | 4.174 |
| SRR8749029 | MeJA induced 9h | 2.354 |
| SRR8749030 | Uninduced | 0.481 |
| SRR8749031 | Uninduced | 0.054 |
| SRR8749032 | Uninduced | 0.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.363 |
| SRR8400027 | Control - Root | 13.854 |