Gene detail information of Glyur000060s00004708 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G54520.1 | 1.00E-47 | |
| NR | XP_003537384.1 | 2.69E-100 | PREDICTED: uncharacterized protein LOC100810018 [Glycine max] |
| COG | YP_007111139.1 | 3.00E-30 | hypothetical protein GEI7407_3620 [Geitlerinema sp. PCC 7407] |
| trEMBL | tr|I1LM20|I1LM20_SOYBN | 1.00E-100 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G31880.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00060 | 30098 | 34253 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000060s00004708.1 | PF07466.6 | DUF1517 | 81 | 202 | 4.90E-27 |
| Glyur000060s00004708.1 | PF07466.6 | DUF1517 | 250 | 315 | 9.60E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.508 |
| SRR1783600 | control | 3.364 |
| SRR1783602 | moderate drought stress | 3.691 |
| SRR1811619 | moderate drought stress | 3.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.220 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.791 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.348 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.668 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.865 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.092 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.241 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.419 |
| SRR2868004 | Drought Stress (root) | 5.814 |
| SRR2967015 | Control (root) | 6.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.229 |
| SRR9715740 | Leaf | 0.977 |
| SRR9715741 | Leaf | 1.196 |
| SRR9715739 | Root | 0.152 |
| SRR9715742 | Root | 1.973 |
| SRR9715743 | Root | 1.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.987 |
| SRR8749028 | MeJA induced 9h | 3.951 |
| SRR8749029 | MeJA induced 9h | 2.657 |
| SRR8749030 | Uninduced | 2.998 |
| SRR8749031 | Uninduced | 2.887 |
| SRR8749032 | Uninduced | 1.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.486 |
| SRR8400027 | Control - Root | 9.463 |