Gene detail

Gene detail information of Glyur000059s00006338.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11710.1	0	lysyl-tRNA synthetase 1
NR	XP_006588836.1	0	PREDICTED: lysine--tRNA ligase-like isoform X1 [Glycine max]
COG	YP_003824578.1	1.00E-139	lysyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
Swissprot	tr\|Q9ZPI1\|SYK_ARATH	0	Lysine--tRNA ligase
trEMBL	tr\|I1L9B1\|I1L9B1_SOYBN	0	Lysine--tRNA ligase {ECO:0000256\|RuleBase:RU003748}

Sequence

Transcript Sequence

>Glyur000059s00006338.2
TACAAGTCAGAACCAAAGCTTCGTCTATTACATACAGTAGATAGGCGCCGCCGTTTTCTAAAACCCTAGTTGCTCTTCTCTGTCATCCAAATTCCTTCCGGCGATTCTCTCTCCCTAACAATGGAAGTTCCNTCGGAGCCACCGGCTACCGGCGCCGGCGAAACCCTAAGCAAGAATGCACTGAAGCGGGAACTCAAGAACAAGCAGAGAGAAGAAGAAAGGAAGCGCAAGGAGGAGGAGAAGGCCAAAAAGGCTGCTGAAATGCAAAGTGCTAAAGATAACAAATCTGCACCTGTTGATGACGAAGATATGGACCCAACGCAATACCTGGAGAACAGGCTTAAGCATCTTGCAGCTCAGAAAGCAGAAGGGAAAAACCCNTATCCACACAAGTTCTTTGTCACTATGTCTATTGATGAATACATCAAGGAATATGGATGTTTAAGCGATGGGCAACACCTTGAGGATGNCTCTGTGTCTTTGGCCGGCCGGATCATGCACAAACGTGCCTCTGGGGCAAAGCTAGTCTTTTATGACCTGCATGGTGGNGGTTTCAAGGTTCAGGTTATGGCCGATGCAAGTAAATCGGACTTGAGCGAGGCTGAGTTTTCTAAATTTCATTCTAATGTGAAGCGTGGTGATATTGTTGGTATCACTGGGTTTCCAGGCAAAAGTAAGAAGGGAGAGCTTAGTATTTTCCCCAAGACTTTNGTGGTGCTGTCTCATTGTCTGCATATGATGCCAAGGCAAAAATCTGCAGCTGCTGCTGATAATGCAAATTTGAAGAAAAATCCATGGGTACCAGGAAGTACCAGGAATCCTGAAGCATACATTTTGAAAGATCAGGAAACAAGATACCGGTTACGTCACTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATNTTCAAGACTAGGTCTAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCCATGATGAACATGATTGCGGGTGGTGCAGCTGCTCGTCCATTTGTAACTCACCATAACGATCTTAACATGAGGTTATTCATGAGAATTGCTCCGGAACTCTATCTTAAGGAGTTGGTTGTTGGTGGGCTGGACCGTGTTTATGAAATTGGTAAACAATTTAGGAATGAGGGCATAGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCTTATAAGGATTACAACGACTTAATGGAAATAACAGAGCAAATGTTGAGTGGTGAGCATTTACTAGGTATGGTTAAGGAACTTACAAAAGGCAGCTATAAAATTAAGTATCATGCAGATGGGGTTGATAAGGATCCTATTGAAATTGACTTTACCCCACCATTCAGAAGGATTGACATGATTGATGAATTAGAGAAGATGGCAGGCCTCAGTATTCCCAAAGACTTGTCAAGTGATGANGCTAATCAATATCTTAAGGATGCCTGCTTGAAGTATGAGATCAAATGTCCTCNTCCTGAAACTACTGCTCGTTTGTTGGATAAACTTTGCAATGCATATACTGAATTGAATGACCCTGTAGTACAACGACAGAGATTTGCTGAACAACTCAAGGATCGGCAATCAGGTGATGACGAAGCAATGGCCTTAGATGAAACATTTTGTACCGCTCTGGAGTATGGTTTGCCGCCAACTGGTGGTTGGGGTTTGGGTATTGATCGGTTGACAATGTTATTGACTGATTCACAGAATATTAAGGAAGTTCTTCTCTTCCCTGCCATGAAACCTCAAGATTGAACCTTCAACCAAAGTTGTGTTGGTGCCAGTAAAATCATTTACAGGAACATGAGAAATGCAAGATGATTAAGGTGGNAAACTCAGTTTTGATCTGTGTTTGATTAATAGACTTGGCATCAACTGTTCATCTGCACTTGATCTATTCTTTTAGGGCTGTTGGGAAGGGTTCTATTCTATATGTTATCTTTTGGTGATTGNCTTGTTTTGGTGCAATATCTTTCGGTGATTGGATTAACTGCTATGTCATATACCGGCTTTTTTTGTGTCAAAGGTGAACATTTAACTATAGCCCTGTGCTAGCTCAAGTCACANACCCCTAAAGACAAGCCTAACAGTTGCGTTTAATTTAGTTGGACATGAGCCAGGACCTTGTCTCAATTGTTATACCTCGTTAGTTATGAGTGTGTTTGGATAAATAGTTTAATTAGGTACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00059	426716	435963	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04567	KARS, lysS	EC:6.1.1.6	Aminoacyl-tRNA biosynthesis	map00970
			Aminoacyl-tRNA biosynthesis	map00970
			Aminoacyl-tRNA biosynthesis	map00970
			Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006430 lysyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004824 lysine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000059s00006338.2	PF01336.20	tRNA_anti-codon	119	195	1.70E-12
Glyur000059s00006338.2	PF00152.15	tRNA-synt_2	241	432	7.50E-47
Glyur000059s00006338.2	PF00152.15	tRNA-synt_2	470	549	3.50E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.768
SRR1783600	control	35.374
SRR1783602	moderate drought stress	36.350
SRR1811619	moderate drought stress	36.517

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	58.474
DRR006520	Root Summer glycyrrhizin high producing strain	57.237
DRR006521	Root Winter glycyrrhizin high producing strain	26.396
DRR006522	Root Winter glycyrrhizin high producing strain	26.234
DRR006523	Root Summer glycyrrhizin low producing strain	56.435
DRR006524	Root Summer glycyrrhizin low producing strain	55.968
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.498
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.320

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	97.079
SRR2868004	Drought Stress (root)	78.506
SRR2967015	Control (root)	73.131

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.186
SRR9715740	Leaf	43.655
SRR9715741	Leaf	48.228
SRR9715739	Root	9.723
SRR9715742	Root	51.358
SRR9715743	Root	45.994

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	156.585
SRR8749028	MeJA induced 9h	101.771
SRR8749029	MeJA induced 9h	120.345
SRR8749030	Uninduced	41.956
SRR8749031	Uninduced	53.309
SRR8749032	Uninduced	57.577

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.080
SRR8400027	Control - Root	61.900