Gene detail information of Glyur000059s00006336 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18940.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_003594946.1 | 0 | Pentatricopeptide repeat-containing protein [Medicago truncatula] |
| Swissprot | tr|O64624|PP163_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g18940, chloroplastic (Precursor) |
| trEMBL | tr|A2Q1M9|A2Q1M9_MEDTR | 0 | Tetratricopeptide-like helical {ECO:0000313|EMBL:ABN05846.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00059 | 420074 | 422512 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000059s00006336.1 | PF13041.1 | PPR_2 | 199 | 245 | 5.70E-12 |
| Glyur000059s00006336.1 | PF12854.2 | PPR_1 | 265 | 295 | 3.90E-06 |
| Glyur000059s00006336.1 | PF13041.1 | PPR_2 | 304 | 351 | 1.30E-11 |
| Glyur000059s00006336.1 | PF13041.1 | PPR_2 | 374 | 421 | 3.00E-14 |
| Glyur000059s00006336.1 | PF13041.1 | PPR_2 | 444 | 491 | 5.30E-11 |
| Glyur000059s00006336.1 | PF13041.1 | PPR_2 | 514 | 563 | 8.30E-12 |
| Glyur000059s00006336.1 | PF13041.1 | PPR_2 | 619 | 667 | 1.50E-09 |
| Glyur000059s00006336.1 | PF12854.2 | PPR_1 | 686 | 718 | 8.20E-15 |
| Glyur000059s00006336.1 | PF13041.1 | PPR_2 | 724 | 773 | 1.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.576 |
| SRR1783600 | control | 2.502 |
| SRR1783602 | moderate drought stress | 2.446 |
| SRR1811619 | moderate drought stress | 2.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.773 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.057 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.615 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.666 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.958 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.072 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.647 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.816 |
| SRR2868004 | Drought Stress (root) | 7.240 |
| SRR2967015 | Control (root) | 8.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.711 |
| SRR9715740 | Leaf | 18.761 |
| SRR9715741 | Leaf | 8.002 |
| SRR9715739 | Root | 3.586 |
| SRR9715742 | Root | 3.866 |
| SRR9715743 | Root | 4.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.193 |
| SRR8749028 | MeJA induced 9h | 6.506 |
| SRR8749029 | MeJA induced 9h | 4.721 |
| SRR8749030 | Uninduced | 3.481 |
| SRR8749031 | Uninduced | 2.865 |
| SRR8749032 | Uninduced | 1.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.609 |
| SRR8400027 | Control - Root | 4.747 |