Gene detail information of Glyur000059s00006335.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57360.1 | 0 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_004487946.1 | 0 | PREDICTED: adagio protein 1-like [Cicer arietinum] |
| COG | YP_325987.1 | 7.00E-16 | bacterio-opsin activator [Natronomonas pharaonis DSM 2160] |
| Swissprot | tr|Q94BT6|ADO1_ARATH | 0 | Adagio protein 1 |
| trEMBL | tr|I1L1A1|I1L1A1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G06220.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00059 | 401894 | 413388 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000059s00006335.1 | PF13426.1 | PAS_9 | 44 | 143 | 1.40E-13 |
| Glyur000059s00006335.1 | PF12937.2 | F-box-like | 204 | 241 | 5.00E-07 |
| Glyur000059s00006335.1 | PF13418.1 | Kelch_4 | 290 | 341 | 1.80E-12 |
| Glyur000059s00006335.1 | PF13415.1 | Kelch_3 | 353 | 402 | 7.80E-12 |
| Glyur000059s00006335.1 | PF13415.1 | Kelch_3 | 405 | 456 | 8.40E-07 |
| Glyur000059s00006335.1 | PF13418.1 | Kelch_4 | 513 | 565 | 1.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.502 |
| SRR1783600 | control | 17.184 |
| SRR1783602 | moderate drought stress | 19.163 |
| SRR1811619 | moderate drought stress | 18.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.435 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.204 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 50.957 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 48.176 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.913 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.637 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.991 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.521 |
| SRR2868004 | Drought Stress (root) | 32.809 |
| SRR2967015 | Control (root) | 37.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.773 |
| SRR9715740 | Leaf | 41.188 |
| SRR9715741 | Leaf | 33.049 |
| SRR9715739 | Root | 26.968 |
| SRR9715742 | Root | 28.185 |
| SRR9715743 | Root | 26.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.354 |
| SRR8749028 | MeJA induced 9h | 24.452 |
| SRR8749029 | MeJA induced 9h | 23.993 |
| SRR8749030 | Uninduced | 11.686 |
| SRR8749031 | Uninduced | 10.551 |
| SRR8749032 | Uninduced | 19.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.447 |
| SRR8400027 | Control - Root | 28.310 |