Gene detail

Gene detail information of Glyur000059s00006324

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16360.3	4.00E-43	5'-AMP-activated protein kinase beta-2 subunit protein
NR	XP_003518577.2	2.57E-120	PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like isoform X1 [Glycine max]
Swissprot	tr\|Q9SCY5\|KINB2_ARATH	2.00E-58	SNF1-related protein kinase regulatory subunit beta-2
trEMBL	tr\|I1JJU2\|I1JJU2_SOYBN	3.00E-120	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G47890.1}

Sequence

Transcript Sequence

>Glyur000059s00006324.1
ATGTCACTCTGCTACCTTGAGTCAATTCCTGCATGGATGTCTACCCTTCTCTCTTTCTTTGCTGGAGTTTTGTTATGGTACTTTGATTCCGAGGATAGTAGTGGTGATTACCATAAAAAGTCAGTGATGGGGAGTAACAGCAGAGGAAAAGATGGTGAAGGAACTTCTGGAGTTAACAGGGTTGAGGAAGATAGCTACGAATATGAACAAGAAGAGATGAGAATGAGGTTTCTGCCGGCTGAACTGCAGCTTCTTCACAGCAACGTGAATACAAATGGGTTTATAGATCCGTTGGTTCAGTTACCTCCACATGGCCCAACGCCACCACCTCCCTTGGTCACGCAACAGGTCCCTGTGGTTGGCATGCAAAGAGCTGGAGTGGTAGCGCAACCCCAGCCACCTGCATTCGTTCAAAATGGATATGTAGAATCAGTGGTTCATGAAAGGTTGAAACGTGTGAGGATCACATGGAATCATGCAGGCGCCAATGTTTCTATTGCAGGATCATGGGACAACTGGGAGACCACGGAGCCCTTGCAGAATGTAGGTCAAAGTTTTGTCATTGTTAAAACACTCCCAATAGGCATCTATCATTACCGTTTCATTGTAGATGGCTATTTGACACATGCTCCAGAGTTCCCATCAGCTCCTGATGATTCAGGTTATGCCTACAATATATTGGATTTGCAGGATTATATCCCAGAAACAGTAGCAAGGTTATCTGCTTCTGAAGATCCTCCATCACCACCATCAAGTTATGATAACATATTCTTAAATGAAGATGAGTTCAGTAAGCCTCCCCCAGAATTACCACAACAACTACCAGTGACAACAAGACAGGAGCTTGTCCCTAGGATTGCACATCTGGAACTGAATCATCTATACATTTACAAAACTGATGGGGATCAATTTGTGGCACTACGATCTACTCATAGGTTTCAACACAAACATGTTACTACTGTACTGTACAAGTCCCTGCACAGGGAAAGATGATGGATGAAGCATTTTGTTTTTTATATGCTATTGTGCTTGCCTCTTTAAGTGATCTTTATGAGAACATTTGTTAAGGTCATTAATCTGATATGTAGAGAGTTGATTGGAATAGGCAAATGAAGAATTGCTTTTCATGTAAACGACTTAAGGAAATATTGTTTATTCTGGCTGTCAATATATATAGATGCATATTCATAGCAGTCATCCTGTTTTNAAGTTTCAAAGTCTGATGCTTTGGAATTGAATATGCTAATTGCATATTCCGCGATGCAGATTCAATGGTTAGTCTGCAGCATACAATGGCTGACACTAAAACCTTTTCCCCTTTTCTCCACTGTACTCTCAGATAATTTCATCATCCTCTGAAACAGGCATTTGTTCCATTGCCTAATGACAATTACCCTGGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00059	320392	324020	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000059s00006324.1	PF04739.10	AMPKBI	244	325	2.70E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.329
SRR1783600	control	31.472
SRR1783602	moderate drought stress	33.857
SRR1811619	moderate drought stress	34.110

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.849
DRR006520	Root Summer glycyrrhizin high producing strain	7.731
DRR006521	Root Winter glycyrrhizin high producing strain	4.634
DRR006522	Root Winter glycyrrhizin high producing strain	4.848
DRR006523	Root Summer glycyrrhizin low producing strain	18.955
DRR006524	Root Summer glycyrrhizin low producing strain	18.542
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.992
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.526

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.723
SRR2868004	Drought Stress (root)	55.946
SRR2967015	Control (root)	46.229

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.634
SRR9715740	Leaf	6.885
SRR9715741	Leaf	9.799
SRR9715739	Root	3.624
SRR9715742	Root	6.260
SRR9715743	Root	4.473

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.062
SRR8749028	MeJA induced 9h	2.149
SRR8749029	MeJA induced 9h	1.437
SRR8749030	Uninduced	0.540
SRR8749031	Uninduced	1.729
SRR8749032	Uninduced	1.070

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.285
SRR8400027	Control - Root	35.611