Gene detail

Gene detail information of Glyur000059s00006320.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G57820.1	0	Zinc finger (C3HC4-type RING finger) family protein
NR	XP_004491625.1	0	PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Cicer arietinum]
COG	NP_295256.1	7.00E-29	hypothetical protein DR_1533 [Deinococcus radiodurans R1]
Swissprot	tr\|Q8VYZ0\|ORTH2_ARATH	0	E3 ubiquitin-protein ligase ORTHRUS 2
trEMBL	tr\|G7L7G5\|G7L7G5_MEDTR	0	E3 ubiquitin-protein ligase orthrus-like protein {ECO:0000313\|EMBL:AET05198.1}

Sequence

Transcript Sequence

>Glyur000059s00006320.1
CCAAAACAAAGCACAGAAGAGAGAAGAGAAGAGAAGAGAGAAGCACCAGTGACATCAAACCAAATGGCGCAACCCAACAAGCAGCTTCCATGCGACTCCGATGGCCTCTGCATGCTCTGCAAACACAAGCCTCCCTCCACCGAGACCATGTCTTGCCGCACCTGCGCCACCCCCTGGCACGTCCCATGCCTCCCCATCCCTCCCTCCACCCTCCTCGACTGGGACTGCCCCGACTGTTCCCAACCCGAAGAACAAGTCCTCCACTCCTCCGCCGCCGCTCCTCCCTCCTCCGGCGACCTCGTCTCCGCCATCCGCGCCATTCAGTCCGATTCCTCACTCACGGAGCAAGAGAAGGCGAAGAAGCGCCAGGAACTCGTTTGTGGATCCGCCAACCCACCACCCTCAGACAACGGAAACGGNAATGCTGGTAACGGCGTTCTCGATATCTTTGACGGAAGCCTCAACTGCTCCTTCTGCATGCAGTTACCAGAGCGACCCGTGACGACGCCTTGTGGGCACAACTTTTGCCTGAGGTGTTTTGAGAAATGGATAGGTCAGGGGAAGCGCACGTGCGCGAATTGTCGGAGGGAAATCCCGGCGAAGATGGCGAGTCAGCCACGAATCAACTCGCAGCTTGCGATAGCGATTCGTTTGGCGAAGGTGGCACGATCGGGTGCGGGAAGCAACGGTGAACCCAAGGTGTACCACTCCGTGCACAATGAGNACCGACCCGACAAGGCCTTCACNACTGAGCGTGCCAAGAAGGCAGGGAAGGCCAATGCCTGCAGCGGCAAGATCTTCGTGACTGTTCCACCCGACCACTTTGGACCGATCCCTGCGGAAAATGACCCAACGAGGAATCGTGGGGTCCTTGTTGGTGACACGTGGGAGGACAGGATGGAGTGTCGCCAGTGGGGTGCTCACCTCCCTCACGTTGCCGGCATTGCTGGCCAGAGCACTCACGGTGCTCAGTCCGTCGCGCTTTCCGGCGGTTACATCGACGACGAGGATCACGGCGAGTGGTTCCTCTATACTGGCAGTGGCGGGAGGGACCTCAGTGGCAACAAACGAACCAACAAAACGCAGTCGTTTGATCAGAAATTTGAGAACATGAATGAGGCATTGAGACTGAGTTGCCGAAAGGGATATCCCGTTCGCGTTGTCAGGTCCCACAAGGAGAAGCGTACTGCTTATGCACCGGAATCTGGGGTGAGATATGATGGGGTCTATAGAATAGAGAAATGCTGGCGTAAAAATGGAATTCAAGGTTGCAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGATGATTGTGGAGACCGACCCCGTCCACTGCCNGAAATTGGAGAGTTGAAGGATGCAATTGATATCACCGAAAGGAAGGGTGATCCATCATGGGATTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACAGAGTAAGAAACCAGTGGACATTATAAACCCTATAGATGGAACAAAAATAAGAGTTAAGCGAAAAGCAAAAGAGGTGACAGTCAAAGAGAGGCTATTGAAAGAGTTTGGTTGCAATATCTGTCGCAAGGTGTTGGCTTTCCCTCTTACTACACCTTGCGCTCACAACTTCTGCAAGGCCTGTCTGGAGGGTGCCTTTTCGGGCCAAAGTTTCATCAGACAGAGAGCAAGTCAAAGCGGACGCACTTTGAGAGCACAGAAGAACATCATGAAATGCCCAACATGTTCAACTGATATAGCTGATTATCTTCAGAATCCACAGGTTAACAGAGAAATGATGGGTGTCATTGAATCACTCCAGCGCCAGGCTGAACAGATGGAGGAGAACTCTGAAGAGTCGAGTGATAAAAATGATGAGAACCTTGAGAAGACCCATGAGGAGACAGAAGTTTCAAAGCCCTGTGATTCAAGTGAGAAAGTGTTGGAGGAAATTAACGACAATGAGCTGAATAGGCCACACAAGCGGAGGAAAGGTGCTGGTGGCACGGTTGTGGTGAACAAGGAGGAACATGCTGAAGATAATGAGCTAGAAGATAAANTTAAGACTTGCAATTAGGGCTGGTGATGGATTGCATCCTGTTGATTTATTTTGGATCTGCATTAAACAGCAGATCCAAAGTGAATTTTTTAGAGTCCTATGTCTTAAGACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00059	301775	305286	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0042393 histone binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000059s00006320.1	PF00097.20	zf-C3HC4	135	173	7.70E-08
Glyur000059s00006320.1	PF02182.12	SAD_SRA	261	416	1.00E-53
Glyur000059s00006320.1	PF00097.20	zf-C3HC4	507	564	9.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.622
SRR1783600	control	16.658
SRR1783602	moderate drought stress	8.413
SRR1811619	moderate drought stress	8.295

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.677
DRR006520	Root Summer glycyrrhizin high producing strain	7.570
DRR006521	Root Winter glycyrrhizin high producing strain	0.358
DRR006522	Root Winter glycyrrhizin high producing strain	0.303
DRR006523	Root Summer glycyrrhizin low producing strain	4.027
DRR006524	Root Summer glycyrrhizin low producing strain	4.071
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.633
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.634

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.040
SRR2868004	Drought Stress (root)	15.867
SRR2967015	Control (root)	19.746

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.405
SRR9715740	Leaf	0.203
SRR9715741	Leaf	0.913
SRR9715739	Root	4.905
SRR9715742	Root	6.195
SRR9715743	Root	5.933

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	188.157
SRR8749028	MeJA induced 9h	80.874
SRR8749029	MeJA induced 9h	54.371
SRR8749030	Uninduced	11.002
SRR8749031	Uninduced	4.140
SRR8749032	Uninduced	7.007

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.909
SRR8400027	Control - Root	26.144