Gene detail

Gene detail information of Glyur000059s00006316

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37040.1	0	PHE ammonia lyase 1
NR	XP_004491627.1	0	PREDICTED: phenylalanine ammonia-lyase class 3-like [Cicer arietinum]
COG	YP_007127054.1	1.00E-81	histidine ammonia-lyase [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|P19143\|PAL3_PHAVU	0	Phenylalanine ammonia-lyase class 3
trEMBL	tr\|G7K0Q0\|G7K0Q0_MEDTR	0	Phenylalanine ammonia-lyase {ECO:0000256\|RuleBase:RU003955}

Sequence

Transcript Sequence

>Glyur000059s00006316.1
ATCAATCATCATAATCTATGAACAAACATGGCAACCATTATTCCACAGAATGCCAACACAAGTGTTTGCTCCAAGTTGAGTGACTCAGACCCTTTGAACTGGGATTGTGCCGCGAATTCACTCAAGGGTAGCCACTTTGAGGAAGTGAAGCGCATGGTGGCAGATTACCGCAAGGCAGTGATCTGTCTGGGTGGTGGGGATGAGACACTAACTATATCTCAGGTGGCTGCTGTTGCTAAGCGTAACTCACAGGTTAAGGTTGACCTCTCAGAGTCTGCAAGGGAGGGTGTTGAGGCCAGCTGCGACTGGATCGCGGAGAACATTAACAAAGGCACTGCCATATATGGTGTCACCACCGGCTTTGGTGCTGCCTCCCACAGACGAACCGAACAAGGCCTTGCTCTTCAGAAGGAGATGGTCAGGTTTTTAAACTGCGCAATATTTGGCCGTGAAGCTGAGTTATCTCATACACTGCCTCAGTCAGCAACCAGAGCAGCTATGCTTGTGAGGGTTAACACCCTTCTTCAAGGGTACTCAGGCATTAGATTTGAAGTCCTAGAAGCGATCACAAAACTCCTCAACCATAATGTCACCCCCATATTGCCNTTACGTGGTACAATTACTGCCTCTGGTGATCTGATTCCTCTGTCCTACATTGCGGCATTGCTAACCGGTAGGCAAAACTCCAGAGCTGTTGGACCCTCAGGAGTGTCCCTTAGTGCGGAGGAAGCTTTCCATTTAGCGGGTCTGAATTCNGGGTTCTTTGAGTTGAAGCCCAAGGAAGGCCTTGCCCTTGTGAATGGAACAGCTGTTGGGTCTGGCGTGGCCTCTGTGGTGCTTTTTGATGCAAACATATTAGCTTTGTTATCAGTAGTTTTATCAGCAGTTTTTGCTGAAGTCATGCAGGGGAAGCCAGAATTTACACACCATCTTATACACAAGCTGAAGTTCCATCCCGGTCAAATTGAGGCTGCTGCTATTATGGAACACATCTTAGATGGAAGCTCTTATGTCAAGAATGCCAAACTGCAGCAGACAGATCCATTGCAGAAGCCTAGGCAGTATCGTTATGCTCTTCAAACTTCTCCTCAGTGGCTTGGTCCACAGATTGAAGTCATCCGGTATTCGACCAAATCGATNGAAAGGGAGATAAATTCAGTGAATGACAATCCTTTGATTGATGTCACAAGAGATAAGGCTCTGAATGGTGGCAATTTCCAAGGCACCCCAATTGGAGTTTCAATGGACAATGTGCGTTTAGCCATTGCTTCAATTGGGAGACTCATCTTTGCCCAATTCACTGAGCTAGTCAATGACTTGTANAGTAATGGGTTGCCATCAAATCTTTCTGCTGGTAGAAACCCAAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTACTGTTCTGAGCTTCAATATTTGGCGAATCCNGTAACAAGCCACGTGCAAAGTGCCGAGCAGCACAACCAAGATGTGAACTCTTTGGGTTTAATTTCTGCCTGGAAAACTGTCGAAGCAGTTGAGATATTGAAGCTCATGTCTTCCACATATTTGGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTGGAGGAAATTTTTAAGGACACGGTTAAGAATACTGTGAGCAGAGTTGCAAAGAAGACATTAACCATAGACGACGAAGAGGGAATTAATCCATTTAGATTTCGTGAAGAAGATTTGCTCAAAGTGGTTGATAGAGAATACGTATTCTCATACATTGATGATCCTTCCAACGTTATGTACCCATTGATGCCAAAACTAAAGCAAGTACTGTATGAGCAAGCACACATCAGTTCCGTTAATGACAAGAATGTGAGCTTGTCAGTTTTTGAGAAGATTGGAGCTTTTGAGGATGAATTGAAGTCTCTGTTGCCAAAGGAAGTTGAGAGTGCAAGGGTGGCTTATGAGAAGGGTAATCCAGTAATTCCAAACAGAATTAAGGAATGTAGGTCATACCCACTATACAAGTTTGTGAGGGAAGAATTAGGGGCAGGGTTGCTGACAGGAGAAAAGACTGTCTCACCAGATGAGGAATTTGAAAAAGTATTTACAGCAATGTGTCAAGCAAAGATTATTGATCCAATTCTGGAATGTCTTGGTGATTGGAACGGAGTTCCCATCCCAATATAATGTGGAATGTTTAGAAATAATTAGATGGCATATTTTTTTTCTTCTCTTGTTACCTGTTTTTGGCTTTTACATGAACAACTTGTCGAGATAAACTTGTGCTTATTTCTCTTGGTGTAAACTTTATACAGATTATTATGCGGACAAAATCAATCGAAAACGAACATGTCATCACTTTAATTATGAAATAATTGCGTCACAAATCCACGTAATTATTTAATATAAAATAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00059	282630	285264	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10775	PAL	EC:4.3.1.24	Phenylalanine metabolism	map00360
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006559 L-phenylalanine catabolic process

GO:0009058 biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003824 catalytic activity

GO:0016841 ammonia-lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000059s00006316.1	PF00221.14	Lyase_aromatic	58	545	1.00E-165

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.441
SRR1783600	control	3.445
SRR1783602	moderate drought stress	3.529
SRR1811619	moderate drought stress	3.446

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.724
DRR006520	Root Summer glycyrrhizin high producing strain	0.673
DRR006521	Root Winter glycyrrhizin high producing strain	0.047
DRR006522	Root Winter glycyrrhizin high producing strain	0.045
DRR006523	Root Summer glycyrrhizin low producing strain	1.105
DRR006524	Root Summer glycyrrhizin low producing strain	1.139
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.307
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.197

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.938
SRR2868004	Drought Stress (root)	84.839
SRR2967015	Control (root)	77.180

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.355
SRR9715740	Leaf	5.555
SRR9715741	Leaf	20.986
SRR9715739	Root	4.226
SRR9715742	Root	14.686
SRR9715743	Root	12.030

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.917
SRR8749028	MeJA induced 9h	2.614
SRR8749029	MeJA induced 9h	1.008
SRR8749030	Uninduced	81.776
SRR8749031	Uninduced	28.647
SRR8749032	Uninduced	5.520

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.325
SRR8400027	Control - Root	22.729