Gene detail

Gene detail information of Glyur000059s00006315

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G12650.1	Endomembrane protein 70 protein family
NR	XP_004491628.1	PREDICTED: transmembrane 9 superfamily member 4-like [Cicer arietinum]
Swissprot	tr\|F4JRE0\|TMN12_ARATH	Transmembrane 9 superfamily member 12 {ECO:0000305} (Precursor)
trEMBL	tr\|G7K0Q1\|G7K0Q1_MEDTR	Transmembrane 9 family protein {ECO:0000313\|EMBL:AET01036.2}

Sequence

Transcript Sequence

>Glyur000059s00006315.1
ATGGAATTACTAACTATGGGGATGAGAAAACCTTTGATCTGCTGGTTTTGCCTNTCCATCGTTGTCTTTGTTCAAATCAGCAATGCTTTTTATCTTCCGGGAAGCTACATGCACACTTACTCAAATGGAGATCCCATTTATGCCAAAGTTAATTCATTGACTTCTATTGAAACCGAGCTTCCCTTCAGCTACTACAGTCTCCCGTACTGCCAGCCCCTTGGCGGCATCAAGAAGAGTGCTGAGAATCTCGGAGAACTCCTCATGGGGGATCAGATTGATAACTCTCCCTACCTTTTCCGCATGAATGTCAATCAGTCAATCTACCTCTGTACTACAACCCCATTGAATGAGGGTGAGGTAAAGCTGCTGAAACAAAGAACTCGTGATCTGTATCAAGTCAATATGATCCTTGACAATTTGCCTGTTATGAGGTATGCCAATCAAAATGGGGTTAAAATCCAGTGGACGGGGTTTCCCGTTGGATACACACCACCNGATGGCAATGCAGATTACATCATCAACCATCTCAAATTCACGGTCTTGGTTCATGAATATGAAGGAAGTGGCATTGAAATCATCGGTACTGGGGAGGAAGGTTTGGGTGTTATTTCTGAAGATGACAAGAAGAAGGCATCTGGATATGAAATTGTTGGTTTTCANGTTGTCCCTTGTAGTATTAAACGCGATCCTGAAGTCATGACAAAGCTCCACATGTATGACAATGTGTCTTCAATAAACTGCCCATCTGAGCTGGACAAGTATCAACCAATAAGAGAGCAGGAGAGGATATCATTTACATATGAAGTTGAATTTGTGAAAAGTGATATAAGATGGCCATCGCGCTGGGATGCTTATTTAAAGATGGAGGGTGCTCGGGTACATTGGTTCTCAATCCTAAATTCCCTTATGGTGATTTTCTTCCTAGCTGGTATTGTTTTTGTCATTTTCTTGAGAACCGTGAGAAGGGACTTGACAAGGTATGAGGAAATGGACAAAGAGACACAGGCTCAGATGAATGAGGAGCTTTCTGGATGGAAGCTTGTTGTGGGTGATGTGTTTAGGGAGCCTGATTGCTCAAAGCTTCTCTGTGTGATGGTTGGGGATGGGGTTCAGATTCTTGGAATGGCTGCTGTTACTATTGTTTTTGCAGCCCTAGGTTTCATGTCACCAGCTTCCCGGGGAATGCTGCTAACAGGGATGATAATTTTATATCTTTTCCTGGGGAGTGCTGCCGGATATGTCAGTGTACGTCTCTGGAGGACCATTAAGGGAACCTCAGAAGGGTGGAGGTCGATTTCCTGGTTTGCTGCATGCTTTTTTCCTGGAATTGCTTTTGTTATTCTAACAGCACTGAATTTTATTCTCTGGGGCAGCAAAAGTACTGGCGCTATTCCCATTTCCTTGTATTTTGAGTTGCTCTTCCTCTGGTTCTGCATTTCAGTGCCACTTACCCTCATTGGAGGATTTATGGGAACAAAAGCTCGGCAAATTGAATATCCTGTGCGAACTAATCAGATTCCAAGGGAAATTCCTGCACGTAAATATCCATCATGGCTTCTTGTTCTTGGTGCTGGAACTCTTCCATTTGGAACCCTTTTCATTGAGCTTTTTTTTATCCTTTCCAGTATCTGGCTTGGGAGGTTCTATTATGTATTTGGTTTCCTGTTGGTTGTTCTTCTATTGCTGGTTATTGTTTGTGCTGAAGTGTCAGTGGTCCTCACATATATGCATCTTTGCGTGGAAGATTGGCGGTGGTGGTGGAAGGCATTCTTTGCTTCAGGCTCTGTTTCTCTTTATGTTTTCTTGTACTCCATCAACTACTTGGTTTTCGACCTGCAGAGTTTGAGTGGACCTGTCTCTGCTATACTTTATCTTGGCTATTCACTGCTCATGGCAATTGCAATCATGTTGTCAACTGGAACCATTGGCTTCCTTATGTCATTCTACTTTGTGCATTACTTGTTCTCATCAGTAAAGATAGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00059	279869	281854	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000059s00006315.1	PF02990.11	EMP70	61	613	2.40E-183

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.487
SRR1783600	control	13.626
SRR1783602	moderate drought stress	10.550
SRR1811619	moderate drought stress	10.489

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.253
DRR006520	Root Summer glycyrrhizin high producing strain	15.158
DRR006521	Root Winter glycyrrhizin high producing strain	12.469
DRR006522	Root Winter glycyrrhizin high producing strain	12.116
DRR006523	Root Summer glycyrrhizin low producing strain	12.575
DRR006524	Root Summer glycyrrhizin low producing strain	13.120
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.299
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.253

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.194
SRR2868004	Drought Stress (root)	37.454
SRR2967015	Control (root)	33.379

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.193
SRR9715740	Leaf	9.151
SRR9715741	Leaf	7.996
SRR9715739	Root	28.216
SRR9715742	Root	21.957
SRR9715743	Root	22.240

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.805
SRR8749028	MeJA induced 9h	23.160
SRR8749029	MeJA induced 9h	12.860
SRR8749030	Uninduced	6.987
SRR8749031	Uninduced	5.908
SRR8749032	Uninduced	8.116

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.905
SRR8400027	Control - Root	37.320