Gene detail information of Glyur000059s00006314 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G61520.3 | 6.00E-121 | photosystem I light harvesting complex gene 3 |
| NR | KHN29869.1 | 0 | Chlorophyll a-b binding protein 3, chloroplastic [Glycine soja] |
| Swissprot | tr|Q32904|CB23_PEA | 5.00E-178 | Chlorophyll a-b binding protein 3, chloroplastic (Precursor) |
| trEMBL | tr|I1JJU8|I1JJU8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G47960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00059 | 272111 | 277826 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000059s00006314.1 | PF00504.16 | Chloroa_b-bind | 67 | 245 | 6.70E-50 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.291 |
| SRR1783600 | control | 8.152 |
| SRR1783602 | moderate drought stress | 10.982 |
| SRR1811619 | moderate drought stress | 10.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.807 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.665 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.275 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.369 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.588 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.446 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 593.937 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 591.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.557 |
| SRR2868004 | Drought Stress (root) | 55.937 |
| SRR2967015 | Control (root) | 29.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 786.838 |
| SRR9715740 | Leaf | 812.194 |
| SRR9715741 | Leaf | 705.122 |
| SRR9715739 | Root | 6.729 |
| SRR9715742 | Root | 12.308 |
| SRR9715743 | Root | 10.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.942 |
| SRR8749028 | MeJA induced 9h | 25.457 |
| SRR8749029 | MeJA induced 9h | 26.565 |
| SRR8749030 | Uninduced | 23.589 |
| SRR8749031 | Uninduced | 18.542 |
| SRR8749032 | Uninduced | 21.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.242 |
| SRR8400027 | Control - Root | 17.884 |