Gene detail

Gene detail information of Glyur000059s00006313

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03475.1	1.00E-175	Coproporphyrinogen III oxidase
NR	P35055.1	0	RecName: Full=Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic; Short=Coprogen oxidase; Short=Coproporphyrinogenase; Flags: Precursor [Glycine max]
COG	YP_003582666.1	9.00E-112	coproporphyrinogen III oxidase [Zunongwangia profunda SM-A87]
Swissprot	tr\|P35055\|HEM6_SOYBN	0	Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic (Precursor)
trEMBL	tr\|I3SZR7\|I3SZR7_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK45759.1}

Sequence

Transcript Sequence

>Glyur000059s00006313.1
GAAGACTAAAGTTTGCAGAGAAGACTGAAGAGAAGGACACATTACACATCCATCCCTTATCGTTACTCAGTTTCAGAAGCCCTCTCCCTTCCTTCTTTTCCTCTGTAACTCACTCTTGAATCGCAATTTATTATTTCAAATCAGATTCGATTCTCTGCTACAATGCGTTGTGCAACCTCCGTTTCAGCTCCTTCCTACGCCATTCCCTTTAGCTTCAGCTCCGCATCAACTTGTCCAACTGCGAAATTACTCACCAATAGGCAGAGCTGGAAGCCTTGGCCAAAGCCTCTAGTTGAAAGCAAAGGCGTGAGGAAAGGAATAATGGTGAGAGCCGCCATTTCGATAGAGAAAGAGACCCCAGAAGCGGAGCGTCCTGAAACGTTTCTTCGAGGTGGGGACGAGTCCCTTTCTTCGTCTTCGCCTTCGTCTGTGAGGGCACGCTTTGAGAAGATGATAAGGGAAGCTCAGGACAGCGTGTGCAATGCCATTGAGGTTGCTGATGGTGGGGCCAAGTTCAAGGAGGATGTTTGGTCGAGGCCCGGTGGTGGTGGTGGCATTAGTAGGGTTCTNCAAGACGGTGCCGTTTGGGAGAAGGCTGGTGTCAATGTCTCTGTCGTTTATGGTGTCATGCCTCCTGATGCTTATCGTGCTGCCAAAGGTGCTGCTGCCTCACCTGATCAGAAGCCTGGTCCCGTTCCGTTTTTCGCAGCTGGAATCAGCTCCGTTTTGCACCCCAAGAACCCCTTTGCCCCAACCTTACATTTCAATTATCGCTATTTCGAAACTGATGCTCCCAAAGATGCTCCTGGAGCACCTAGACAATGGTGGTTTGGTGGGGGAACTGACTTAACACCTGCTTACATTTTCGAGGAGGATGTCAAGCACTTCCATTCAGTTCAAAAACAGGCTTGTGACAAGTTTGATCCTACTTTTTACCCCCGATTCAAGAAATGGTGTGATGATTACTTTTATATCAAGCATCGAGGTGAAAGGAGAGGGCTTGGAGGACTATTTTTTGATGATCTGAATGACTATGATCAGGAGATGCTCCTTTCCTTTGCAACTGAATGTGCAAATTCTGTTATTCCTGCTTATATACCTATCATAGAGAAAAGGAAGGATTTGCCCTTTACAGATCATCAGAAAGCATGGCAACAATTGCGAAGGGGACGATATGTTGAATTCAATTTGGTATATGATAGGGGCACAACATTTGGACTAAAAACTGGAGGGAGAATAGAGAGTATTCTTGTTTCTCTCCCACTGACTGCTCGGTGGGAGTATGATCACAAACCAGAGGAAGGAAGCGAAGAATGGAAACTCTTGGATGCGTGCATCAACCCGAAGGAATGGATCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00059	266202	269784	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00228	CPOX, hemF	EC:1.3.3.3	Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

biological_process

GO:0006779 porphyrin-containing compound biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0004109 coproporphyrinogen oxidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000059s00006313.1	PF01218.13	Coprogen_oxidas	93	398	5.90E-130

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.425
SRR1783600	control	23.927
SRR1783602	moderate drought stress	22.548
SRR1811619	moderate drought stress	22.417

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.947
DRR006520	Root Summer glycyrrhizin high producing strain	27.488
DRR006521	Root Winter glycyrrhizin high producing strain	17.832
DRR006522	Root Winter glycyrrhizin high producing strain	16.447
DRR006523	Root Summer glycyrrhizin low producing strain	27.435
DRR006524	Root Summer glycyrrhizin low producing strain	25.930
DRR006525	Leaf Summer glycyrrhizin high producing strain	97.477
DRR006526	Leaf Summer glycyrrhizin high producing strain	96.564

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.697
SRR2868004	Drought Stress (root)	20.828
SRR2967015	Control (root)	23.692

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.915
SRR9715740	Leaf	43.965
SRR9715741	Leaf	29.456
SRR9715739	Root	19.959
SRR9715742	Root	18.674
SRR9715743	Root	15.677

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	75.784
SRR8749028	MeJA induced 9h	101.209
SRR8749029	MeJA induced 9h	139.218
SRR8749030	Uninduced	104.006
SRR8749031	Uninduced	114.456
SRR8749032	Uninduced	125.015

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.183
SRR8400027	Control - Root	33.436