Gene detail information of Glyur000059s00006312 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G24290.1 | 0 | AAA-type ATPase family protein |
| NR | XP_003618090.1 | 0 | ATPase WRNIP1 [Medicago truncatula] |
| COG | YP_003825061.1 | 1.00E-145 | recombination protein MgsA [Thermosediminibacter oceani DSM 16646] |
| Swissprot | tr|Q9CAQ8|RFC5_ARATH | 1.00E-12 | Replication factor C subunit 5 |
| trEMBL | tr|G7KFD2|G7KFD2_MEDTR | 0 | AAA family ATPase {ECO:0000313|EMBL:AET01049.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00059 | 263935 | 265647 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000059s00006312.1 | PF00627.26 | UBA | 4 | 36 | 0.00015 |
| Glyur000059s00006312.1 | PF00004.24 | AAA | 167 | 278 | 1.60E-16 |
| Glyur000059s00006312.1 | PF12002.3 | MgsA_C | 411 | 559 | 7.10E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.003 |
| SRR1783600 | control | 14.102 |
| SRR1783602 | moderate drought stress | 25.373 |
| SRR1811619 | moderate drought stress | 25.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.767 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.864 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.156 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.300 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.939 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.504 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.699 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.151 |
| SRR2868004 | Drought Stress (root) | 9.417 |
| SRR2967015 | Control (root) | 10.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.737 |
| SRR9715740 | Leaf | 12.194 |
| SRR9715741 | Leaf | 9.944 |
| SRR9715739 | Root | 30.815 |
| SRR9715742 | Root | 16.661 |
| SRR9715743 | Root | 19.849 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.814 |
| SRR8749028 | MeJA induced 9h | 6.305 |
| SRR8749029 | MeJA induced 9h | 7.550 |
| SRR8749030 | Uninduced | 1.938 |
| SRR8749031 | Uninduced | 2.835 |
| SRR8749032 | Uninduced | 5.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.766 |
| SRR8400027 | Control - Root | 13.264 |