Gene detail

Gene detail information of Glyur000059s00006311

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22150.1	0	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_003618091.1	0	Pentatricopeptide repeat-containing protein [Medicago truncatula]
COG	YP_003950779.1	9.00E-06	coproporphyrinogen III oxidase, aerobic [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q9LIE7\|PP246_ARATH	0	Pentatricopeptide repeat-containing protein At3g22150, chloroplastic (Precursor)
trEMBL	tr\|G7KFD3\|G7KFD3_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AET01050.1}

Sequence

Transcript Sequence

>Glyur000059s00006311.1
ATGTATCAGTCCAATGGTATTAGGATGAATATGGCTTCTCCCGTCGTTCCTCTTCCGGTGTCCGCTCCCAACACAGCCGCAGCCGCAGCCGCAGGGTCTTGTGACATCCGCGTTGCGAAGCAGAAGGAGTGGAACAAAGCCATTAGCACCAGCATCCGGTCCCGCCTGAGCAAGCTATGCCAACAAGGGCAGCCTCACCTGGCTCGCCATCTCCTCGAAACCCTTCCTCGCCCCTCCACCGTTGTATGGAACTCCGTCATCATTGGCTTCATCTGCAACAACATGCCTCTCGAAGCCCTCCTCTTGTACTCTCAAATGAGGTCCACCCCCAATACACGTTTCGATCCTTATACTTTCTCTTCCACCCTCAAGGCATGTGCCCTCACTCACGACCTCATCTCCGGTAAAGCCCTTCACGCTCATTTCCTTCGCTCCCAATCCAACCCTATCTCCAACCCTGGCCCCAGTAGGATCGTTTATAATTCCCTCTTGAATATGTACTCTTCCTGCCTTCCCCTTACCACCACTACCCTTCTTCCCCAACACGACTACGTCCTCAAAGTGTTCGGCGTTATGCGCAAACGAAACGTCGTCGCTTGGAACACCTTGATTTCATGGTACGTCAAGACCAACCGCCACCTCCACGCGCTTCACGCCTTCGCCTCATTGATCAAACACTCCGTCACGCCCACCGCTGTCACTTTTGTTAATCTCTTCCCTGCTGTCTCCAAATTCGGCGATTCCAGAGTTGCTCACTTGTTTTATGGGTTTCTTCTTAAATATGGTGATGAGTATGTGAGTGATGTGTTTGTTGTCAGCTCCGCGATACTCATGTTTGCTGATCTTGGTTGCGTAGATTACGCACGCATGGTGTTTGATCGGTGTTCGCACAGAAACACCGAGGTCTGGAACACCATGATTGGTGCCTATGTTCAAAATAACCTTCCCATTCAAGCAATCGATGTATTCATTCAGGCCTTGGAGACAGAGGAAGCTATATGCGACCATGTCACTTTTCTGAATGTTGTTACTGCTGTTTCACAGCTTCAGCAACTCAAACTGGCCCAGCAGCTCCATGCATTTGTTCTGAAAAGTTTGCCGGTTACGCCAATCATTATTCTCAATGCAATAGTTGTTATGTACTCGAGGTGCAATCTTATTGATACTTCGTTTAAGGTCTTTGATAAGATGTTCGAAAGGGATGCCGTTTCGTGGAATACCATAATATCTGCCTTTGTGCAGAATGGTCTGGATGAGGAAGCGCTTATGCTTGTGTGTGAGATGCAGAAGCAAGGGTTTGTGATTGATTCTGTCACCGTGACTGCCCTTCTTTCTGCAGCTTCTAACCTTAGGAACTCATGTATTGGGAGGCAAACTCACGCGTATCTGACTCGCCATGGGATACAATTTGAGGGAATGGAGAGTTATCTGATCGATATGTATGCAAAATCCCACCTGATTAGGACTTCCGAATTGTTATTTGAGCAGAACTGCCCCAGCGATAGAGATCAGGCCACGTGGAATGCTATGATTGCTGGCTATACTCAGAATGGGCTCTATGAGAAAGCCATTCTCCTCCTTAGAGAGGCATTGGTGCACAGGGTAATACCAAATGCAGTGACCTTAGCATCAATCCTCCCAGCTTGTAGTACAATGGGAAGCATGGGATTTGCTAGGCAACTTCATGGATTCTCCATACGTCATTTCTTGGAGCGAAATGTTTATGTGGGGACTGCTTTAATTGACACGTATTCCAAATCTGGTGCAATTAGTTATGCTGAAAATGTTTTTATGAGAACACCTGAGAAGAATTCGGTCACATACACCACAATGATGATGAGCTATGGTCAGCATGGGATGGGGAAGAAAGCCCTTACCTTGTATGATTCTATGCTGAGATCTGGCGTTAAGCCTGATGCAATTACTTTTGTTGCCATCTTGTCTGCTTGTAGTTATACTGGATTGGTTGATGAGGGTCTTCAAATATTTGAATCTATGGAGAAAGTGTATAAAATTAAACCCTCAATTGAACATTATTGTTGTGTCGCAGACATATTAGGGAGGGTTGGGAGGGTGGTCGAAGCCTATGAGTTTGTCAAGGGGTTGGGTGAGGATGGTAATGCAAAGGAAATCTGGGGATCTCTTCTTGGGGCTTGCAAAAATCATGGGCATTTTGAATTGGGAAAAGTCATTGCTGAAAAGTTGCTTAATATGGAGACAGAAAAGAGGATGGCAGGATATCATGTTTTGCTCTCAAATATTTATGCAGAGGAAGGGGAGTGGGAAAATGTTGATAGAGTGAGAAATCAGATGAAGGAAAAAGGTCTGCAAAAGGAAATGGGATGTAGCTGGGTTGAGATTGCTGGGTTTGTGAACTGCTTTGTATCTAGAGATGAGAANCACCCTCAAAGTGGTGAAATATATTATATCTTGGACATGTTGACTATGGATATGAAGGATGCGGTTATTACTGACATGTTTGATCATACTTTTGCCTCCAACTCAAGAAATGGTGTGATGATATCTAGCATCGAGGTGAAAGGAAAAGGGATTGAAGAAATATTTTTTAGTGATCTGAATGGCTGNGATCAGGAGATGCTCCTTTCCTTTGCTACCGAATGTGCACATTCAGTTATTCCTGCTTATATACTTGTCATGGAGAAAAGGAAGGATTTGCCCTCTACCGATGGGCACAAAACATGGCAACGATTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00059	256341	260385	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006779 porphyrin-containing compound biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0004109 coproporphyrinogen oxidase activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000059s00006311.1	PF01535.15	PPR	81	108	0.0022
Glyur000059s00006311.1	PF13041.1	PPR_2	196	241	1.70E-07
Glyur000059s00006311.1	PF01535.15	PPR	302	324	0.0037
Glyur000059s00006311.1	PF01535.15	PPR	374	400	0.98
Glyur000059s00006311.1	PF13041.1	PPR_2	401	446	3.50E-10
Glyur000059s00006311.1	PF01535.15	PPR	506	529	1.30E-05
Glyur000059s00006311.1	PF13041.1	PPR_2	603	650	3.30E-12
Glyur000059s00006311.1	PF01218.13	Coprogen_oxidas	849	903	1.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.785
SRR1783600	control	1.815
SRR1783602	moderate drought stress	2.781
SRR1811619	moderate drought stress	2.748

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.431
DRR006520	Root Summer glycyrrhizin high producing strain	2.676
DRR006521	Root Winter glycyrrhizin high producing strain	0.547
DRR006522	Root Winter glycyrrhizin high producing strain	0.541
DRR006523	Root Summer glycyrrhizin low producing strain	2.821
DRR006524	Root Summer glycyrrhizin low producing strain	2.803
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.218
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.136

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.668
SRR2868004	Drought Stress (root)	2.767
SRR2967015	Control (root)	3.018

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.575
SRR9715740	Leaf	4.604
SRR9715741	Leaf	3.061
SRR9715739	Root	1.253
SRR9715742	Root	2.228
SRR9715743	Root	1.634

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.591
SRR8749028	MeJA induced 9h	1.314
SRR8749029	MeJA induced 9h	0.708
SRR8749030	Uninduced	0.210
SRR8749031	Uninduced	0.275
SRR8749032	Uninduced	0.430

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.189
SRR8400027	Control - Root	3.425