Gene detail

Gene detail information of Glyur000059s00006307

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G17380.1	4.00E-86	associated protein 19
NR	XP_002269251.1	1.35E-110	PREDICTED: AP-1 complex subunit sigma-1 [Vitis vinifera]
Swissprot	tr\|Q8LEZ8\|AP1S1_ARATH	1.00E-109	AP-1 complex subunit sigma-1
trEMBL	tr\|A5C1I3\|A5C1I3_VITVI	5.00E-111	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN79566.1}

Sequence

Transcript Sequence

>Glyur000059s00006307.1
AAAAAAAAGAGAATTGACGGATTAGGAAGAAGGAAAAAAAAGAAGGAAAAAAAAAAAGGAGGGGTGGACTAAAGTTGGAATGGACCGAGTCCATGTTCCAGCTTGTAGTGTACTGGTCTCAGACCGTCTCGTCGGAAACCGAAAGAAAAGGAGTTTACAAATTAGATTTGTTTTGGAAATAAAATAAAATAAACAAAAATCCAAAGTCGAGAGAAGGAGAAGGAGAAGGGATTGTGATCTCGTTGGGGGAGGGTGCGAATCAANCCAAATGATAAACTTTGTGCTGCTCATTAGTCGTCAAGGGAAGGTCAGGCTGACAAAATGGTATTCACCTTACTCTCAGAAGGAAAGAAGCAAGGTAATCCGTGAGCTCAGCGGAGTGATTCTTACCCGTGCTCCCAAGCTCTGTAATTTTGTAGAGTGGAGAGGATATAAAGTTGTTTATAAAAGGTATGCTAGTCTTTATTTCTGCATGTGTATCGATGAAGAAGACAATGAATTGGAAGTCCTTGAAATAATTCATCATTATGTGGAGATTCTGGATCGGTATTTTGGCAGTGTCTGTGAACTGGACTTGATATTCAACTTCCATAAGGCCTATTATATACTAGATGAACTTCTAATTGCTGGTGAGCTTCAGGAGTCAAGCAAAAAAACTGTTGCCCGGTTGATAGCTGCGCAGGATTCATTGGTGGAGACTGCTAAGGAGGAAGCCAGTTCAATAAGTAATATAATCGCACAAGCCACCAAGTAAAGGAAATCCGATGTTGCAGTTGTTGGCATTTTTACGAATGAAGAACTGTCTGTCATGATTAAAGTGTGGACTTTTCCTGCTAATATAGTTTATGTCTATGTTTTTTTTTTTGATATTAAGTTGAATTTGTACTAGAAAAGAAATTCAGAAACCAAGTCCTAACCAGGAACATTTCGTCTTCTTGATCCGAGACGCAACTCTCATGGTTGGCTATTTCAAGTTTGTGTACGCGTGACCTGTTTATTACTGGTGGTGATCTATTTGCTTGAGGAATACTTTGTGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00059	240190	242563	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0006886 intracellular protein transport

GO:0015031 protein transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0030117 membrane coat

molecular_function
GO:0008565 protein transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000059s00006307.1	PF01217.15	Clat_adaptor_s	1	140	3.80E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.707
SRR1783600	control	32.348
SRR1783602	moderate drought stress	20.692
SRR1811619	moderate drought stress	20.705

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	81.152
DRR006520	Root Summer glycyrrhizin high producing strain	79.796
DRR006521	Root Winter glycyrrhizin high producing strain	62.652
DRR006522	Root Winter glycyrrhizin high producing strain	60.376
DRR006523	Root Summer glycyrrhizin low producing strain	42.699
DRR006524	Root Summer glycyrrhizin low producing strain	41.569
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.524
DRR006526	Leaf Summer glycyrrhizin high producing strain	42.709

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	205.841
SRR2868004	Drought Stress (root)	202.047
SRR2967015	Control (root)	185.770

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	106.885
SRR9715740	Leaf	75.676
SRR9715741	Leaf	101.661
SRR9715739	Root	8.887
SRR9715742	Root	40.982
SRR9715743	Root	35.664

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	223.522
SRR8749028	MeJA induced 9h	111.848
SRR8749029	MeJA induced 9h	177.053
SRR8749030	Uninduced	131.166
SRR8749031	Uninduced	89.809
SRR8749032	Uninduced	82.113

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	138.132
SRR8400027	Control - Root	148.732