Gene detail

Gene detail information of Glyur000059s00006299

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38380.1	3.00E-147	MATE efflux family protein
NR	XP_004491639.1	0	PREDICTED: MATE efflux family protein 3, chloroplastic-like [Cicer arietinum]
COG	YP_003706607.1	5.00E-40	MATE efflux family protein [Truepera radiovictrix DSM 17093]
Swissprot	tr\|Q9SVE7\|MATE3_ARATH	0	MATE efflux family protein 3, chloroplastic (Precursor)
trEMBL	tr\|G7KFE6\|G7KFE6_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000059s00006299.1
GTTCGCGNCGATGCACTCTGTGGGCTGTCGCGGCGCGGGAGCTTGGGGTATTATTATAAATTAATATTACTAATCAATTAACATATTGTATTTGTATTAGATTAGATTGCTCTCTATAGTCGGAAACTCGGAATTCCATCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCATCATCATCATCATCGTCGTCGTCGGATGAACTTTCCTCGTGTTACTTATTACTCCCCCTAATACTAATAACACCCAAGCAGGCGGGCATGAAGGGCACCACCAATTGCAATTTGACCACCGCTTCTGCCTCTCAATGTCACGGTCTCAGCTTTACCGGCAAAAGCTTATGCAACTTCAGGCGCAGCAAATGTTATTATCATTATTATTCTTGTAACTTGCTTGGTGTGAGGGATTCCCGCCTCTCCACCTCCCCATTCATAACCCTTCGCGCTAAACCCTCTTCACACTCACCCCTTCCCAACCCTTGTTTTGCTTCTCCTCCCCTTAACGAACAACACTCTCTCCTCACAAACGACTCTGATGAGGATGAGCCCACTGCAACTGCCGCTTCCACTCCTGAATTGCCCTTCAATAAAAAGGAAGAACCTTACTCAGCTTCAGATGCGAAACGCGAGCTCTTGTTGCTCTCTTTGCCTGCCCTTGCTGGACAGGCAATTGACCCCTTGGCACAGCTGATGGAGACTGCTTACATTGGTCGACTGGGCACTGTGGAGTTGGCTTCTGCGGGTGTTTCCGTATCCATCTTTAACATCATTTCAAAGCTATTTAATATCCCCCTTCTTAGTGTCGCTACTTCTTTTGTTGCCGAGGACATGGCCAATATTTCTAATGCTGCTTCAGATCAGGGTTGTCTAGAAAATAGTGGCAATGGTAAACATTTCAAAAGAGTTTCTCAAAGAAAGCAATTATCCTCTGTCTCCACTGCTTTGTTATTGGCTCTGGGGCTTGGCATTTTTGAGGCTTTGGCTATGTATCTTGGATCTGGAACATTTCTTCGTATAATTGGGGTGTCAATGGAAAATCCGACATATGTTCCGGCACAAAAATTTCTCTCTTTAAGAGCGATCGGTGCCCCTGCAGTTGTGCTTTCTTTGGCTCTTCAAGGCATTTTCCGCATTGGTAATCTTTCAGCTGTCTTTTTATTCCCCTTACTTATGTATTACTTTCAGTTGGGTGTAACTGGTGCAGCCATTTCCACCGTTCTCTCTCAATATATTGGGACCTTGTTGATGATTTGGTGTCTGAATAAGAGAGCTGAGTTACTACCTCCAAAGATGGGAAACCTGCAATTTGGCGGTTATATTAAGTCTGGTGGTTTCCTTCTTGGAAGAACGCTTGCTGTTCTTACAACCATGACATTGGGGACATCAATGGCTGCTCGTCATGGTCCAGTAGCTATGGCTGCACATCAGATATGTATGCAAGTGTGGCTGGCCGTTTCCCTTCTTACAGATGCATTGGCTGCATCTGGTCAGGCCCTTATTGCAAGTTCTCTATCCAGACATGAATACAAAGTTGTGAAGGAAATTACTAATTTTGTATTAAGGATTGGACTGCTGACAGGGATCTGCTTGACTGCAATTCTGGGTGCATCTTTTGGATCTTTAGCTACCCTTTTCACCCAGGACTCTCAGGTCTTGCAGGTTGTCAGAACTGGGACATTGTTTGTCAGTGCTTCTCAACCATTTAATGCACTGGCTTATATTTTTGATGGTCTCCATTATGGTGTTTCTGATTTCCCATATGCTGCTTTCTCCATGATGTTTGTGGGAGCAGTCTCCTCAGTATTTTTGGTATTTTCCTCTTCACGTTTTGGCCTTAGCGGTGTATGGCTGGGCTTGAGTCTCTTCATGGCACTTCGTGTAGTAGCTGGTTCTTTCAGATTACTATCAAAGAATGGTCCTTGGTGGTTTCTACACAAGGATTTTCACATCGCAGAGATGGTCTCTTAAGTCTTAAGATGGAGAATATGGAAGAAACCGTGGACGTGACATTTTTCAGGATGATTCTCTGCNTCGGATTCGGATACAATATTTACTTATTTAGCATCTGTTTGTTTGAGATTTTTTTTTGAACGCTAACGGAAGAATAATAATACCTCCCCATGCAACTTTTGAGAAGCTGCCCTTCGGTAGATTTTAGTAAACGTGTTTCTAAACGGGATTTCATATACTTAGAATTTGAGTTTTTCTGTTGTGGTTGTGTAGGAAATAGGACCTTTTAGAAGCACTTTGTTAGCCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00059	182844	188860	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000059s00006299.1	PF01554.13	MatE	371	507	1.90E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.172
SRR1783600	control	18.655
SRR1783602	moderate drought stress	19.260
SRR1811619	moderate drought stress	19.382

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.981
DRR006520	Root Summer glycyrrhizin high producing strain	22.659
DRR006521	Root Winter glycyrrhizin high producing strain	26.089
DRR006522	Root Winter glycyrrhizin high producing strain	26.229
DRR006523	Root Summer glycyrrhizin low producing strain	21.645
DRR006524	Root Summer glycyrrhizin low producing strain	21.049
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.817
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.704

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.772
SRR2868004	Drought Stress (root)	22.138
SRR2967015	Control (root)	22.307

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.615
SRR9715740	Leaf	27.044
SRR9715741	Leaf	21.162
SRR9715739	Root	21.530
SRR9715742	Root	25.534
SRR9715743	Root	25.414

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	60.012
SRR8749028	MeJA induced 9h	59.296
SRR8749029	MeJA induced 9h	61.702
SRR8749030	Uninduced	44.317
SRR8749031	Uninduced	70.018
SRR8749032	Uninduced	70.565

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.098
SRR8400027	Control - Root	24.585