Gene detail

Gene detail information of Glyur000059s00006287

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35290.2	0	glutamate receptor 2
NR	XP_006595634.1	0	PREDICTED: glutamate receptor 3.2-like isoform X2 [Glycine max]
COG	YP_007161539.1	4.00E-22	amino acid ABC transporter substrate-binding protein [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q93YT1\|GLR32_ARATH	0	Glutamate receptor 3.2 (Precursor)
trEMBL	tr\|I1M634\|I1M634_SOYBN	0	Glutamate receptor {ECO:0000256\|PIRNR:PIRNR037090}

Sequence

Transcript Sequence

>Glyur000059s00006287.1
ATGACAGCCCTCAAGTTCTTGGTGACTGATACTGTAGCCATAATTGGTCCACAAAATTCAGTAATGGCCCATGTGCTGTCGCATCTTGCAAATGAGCTCCATGTTCCCCTTCTGTCCTTCACGGCCCTGGATCCCACCCTCACACCTCTTCAGTATCCATATTTCGTCCAAACAGCACCCAGCGATCAGTTCCAGATGACTGCAATTGCGGACATGATCACTTATTTTGGCTGGAGACAAGTCATTGCAGTCTACAGCGATGATGATCAGAGCCGAAACGGGATCAATGTATTAGGGGATAAGCTCGCTGGGAGGCGCTGCAAGTTGTCATACAAAGCATCGCTGCCCCCCGATCCAACCGCCACTCCAAGTGACGTTACCGATCAGTTGGTGAAGATTACAGGAATGGAAGCTCGAGTGATTGTTCTGCACACCTACGCGCAGACAGGACTCTTGGTCTTTGACGTGGCTCACAAACTGGGGATGATGAGCNGAGGGTATGTGTGGATAGCCACTTCTTGGCTATCAACTGTGTTGGANTCTTCAACTTCCACGTCCTCATTCAATACTACTTCCAACTCCATTCAAGGAGTTCTCACCCTTCGCCCTCACACCCCACATTCGAGGAAGAAACAGGAATTCATCTCAAGGTGGAAGAATCACTTGAGCAATGGATCCATCGGCTTAAATCCATATGGACTCTATGCCTATGATTCTGTTTGGATGGTTGCCCATGCACTAAAGCAATTCTTTGAACAGAATGGAACCATCTCATTCTCTAACAACACAAATCTAAGTGGCATGGGGGGAGAGACTCTGGATCTTGGTGCTTTGAGCGTTTTCGATGGAGGAAAGCAGTTACTTGATAACGTGTTGCGCATTAACATGACTGGGTTGACAGGTCCCATTCAGTTTGGTCCAGACAGATCCCCCTTGCATCCATCCTATGACATCCTTAATGTGATTCATGGCACTGGTTATAATAATAGCTATAGGGGTGTTGGTGTTGGATACTGGTCTAACTATTCAGGGCTCTCTGTAATAACCCCTGAGAGACTCTATACAAACCCTGCCAATCGCTCCGTCTCAAACCAGCATCTGCACCGTGTCGTGTGGCCTGGAAATACAACAGAGACGCCCCGTGGGTGGGTTTTCCCAAACAATGGAAGGCAACTCAGAATTGGGGTTCCCAACAGAGTTAGTTACCNGGACATGGTCTCACCAGTAAATGGCACCAATAATGCAGTTGTTCAAGTTCAAGGGTATTGCATAGACATATTCCTGGCTGCCATAAAATTGCTTCCATATGCAGTTCAATATAGGTTCATTCTGTTTGGAGATGGACACAAGAACCCAAGCTACTATGATCTTGTCAACATGATCACTTCTGACGCTTTTGATGGGGTTGTAGGTGACATCGCCATTGTCACTAACCGGACAAAGATTGTGGATTTTACTCAGCCATACANAGAGTCGGGTTTAGTAGTGGTTGCTTCGGTAAAGAAGTTGAAGTCAAGTGGCTGGGCTTTCTTGCGACCATTCACTCCGCAGATGTGGGGTGTCACTGCTCTTTTTTTCCTCCTTGTTGGAGCAGTGGTGTGGATTCTTGAACATAGAACTAATGATGAGTTTCGGGGACCTCCAAAGAAGCAGATAAAACAAACCAATAACCAGCTTCATAATTTATTGTTTGTGCGGCGCGCGCATGCAGGAGAGAACACAGTTAGTTCACTTGGTCGTTTAGTGTTGATAATCTGGCTGTTTGTGGTTCTGATAATCAATTCAAGCTACACGGCAAGCTTGACGTCAATTCTCACCGTGCAGCAGCTGTCCTCGCCCATAACAGGCATCAATAGCCTCATCTCCGGCAANGAACCCATCGGCTTCCAAGTAGGGTCCTTTGCTGAGAACTACCTGACCGAGGAACTCAACATCCCCAGGCGTAGACTCGTTCCTCTTGGCTCACCGGAAGAGTATGCCGTCGCCCTTGAGAAGGGAACTGTGGCAGCAGTGGTGGATGAACGACCCTATGTACAACTCTTCCTCTCAAACCACTGCAAGTTCTCAATCAGGGGCCCAGAGTTCACCAAAAGCGGATGGGGATTTGCATTNAGGAGGGACTCTCCTTTGGCAATTGATATGTCAACTGCCATTCTGACTCTGTCTGAGAACGGTGAACTTCAGAGGATCCATGAAAAGTGGCTCTCCAAGAAGGCTTGTAGTAGTAGTTTCCAGAGTGCAGGGGCAGAGAATGAGCAGCTTCGATTGAATAGCTTCCGGGGCTTGTTTCTGATATGTGGGATAGCGTGTTTCCTTGCGCTCCTCATCTACTTCTCTTCAATGCTATGCCGCTTCACTCAATCTCAAAACAACAACAGATCAGCCCCTCCTCCTTCCACTTCCAATCGCCCTCCCACCTCCCACTACTCTGCACGCATCCAGACTTTCCTTANCTTTGTTGATGAAAAAGAAGACGCCACGTCACACTCACAATCCACGCTAAAAAGAAAAATTGAGGAGGATATTTCATCATCAATTACTACTATCAATAATGTTAGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00059	89337	92327	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007186 G-protein coupled receptor signaling pathway

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0004930 G-protein coupled receptor activity

GO:0004970 ionotropic glutamate receptor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000059s00006287.1	PF01094.23	ANF_receptor	10	321	1.20E-66
Glyur000059s00006287.1	PF00497.15	SBP_bac_3	417	736	1.70E-23
Glyur000059s00006287.1	PF00060.21	Lig_chan	517	770	9.60E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.049
SRR1783600	control	1.037
SRR1783602	moderate drought stress	1.828
SRR1811619	moderate drought stress	1.826

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.571
DRR006520	Root Summer glycyrrhizin high producing strain	3.484
DRR006521	Root Winter glycyrrhizin high producing strain	1.123
DRR006522	Root Winter glycyrrhizin high producing strain	1.121
DRR006523	Root Summer glycyrrhizin low producing strain	4.506
DRR006524	Root Summer glycyrrhizin low producing strain	4.599
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.205
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.251

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.546
SRR2868004	Drought Stress (root)	4.517
SRR2967015	Control (root)	7.933

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.371
SRR9715740	Leaf	12.513
SRR9715741	Leaf	13.064
SRR9715739	Root	1.476
SRR9715742	Root	4.930
SRR9715743	Root	3.917

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.028
SRR8749028	MeJA induced 9h	0.038
SRR8749029	MeJA induced 9h	0.090
SRR8749030	Uninduced	0.025
SRR8749031	Uninduced	0.030
SRR8749032	Uninduced	0.186

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.420
SRR8400027	Control - Root	0.989