Gene detail

Gene detail information of Glyur000059s00006286

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G17265.1	2.00E-109	homoserine kinase
NR	XP_004496580.1	0	PREDICTED: homoserine kinase-like [Cicer arietinum]
COG	YP_676708.1	2.00E-64	homoserine kinase [Cytophaga hutchinsonii ATCC 33406]
Swissprot	tr\|Q8L7R2\|KHSE_ARATH	2.00E-150	Homoserine kinase (Precursor)
trEMBL	tr\|D2DKF1\|D2DKF1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G00340.1}

Sequence

Transcript Sequence

>Glyur000059s00006286.1
ATGGCGGCAACAACACCATCATCATGGCTCCTCTGTCCGACATTGCCGAATTCGAAAGGAGGCGGCAAGAATAGCGCGATGATGATGAGAATGAGAATCAGATGCAGCAGCAGCAGCCAGAATCCCGTGACGATTACACACACAAAGAAGGAGAGGGAGGAGCCGGAGGCCATATACAGATCCGTGAAGGCGTTTGCCCCGGCGACGGTGGCCAATCTGGGACCTGGATTCGACTTCCTGGGCTGCGCCGTGGACGGCATCGGGGACACCGTGTCCGTGAGGGTGGACCCAGACGTCCACCCCGGTGAGATATGCATCTCCGATATCTGCGGTAACGGCCCCAACGTCCACAAGCTCAGCAAAAACCCTCTCTGGAACTGCGCGGGGATCGCCGCCATCGAGGTCATGAAGATGCTCGGCGTCCGATCCGTGGGCCTCTCGCTGTCCCTCGAGAAGGGTCTGCCCCTGGGGAGTGGCCTGGGGTCCAGCGCGGCCAGCGCCGCCGCAGCCGCCGTCGCCGTCAACGAGATATTCGGCAAGAGGCTGGGCGTGGACGACCTCGTGCTGGCGTCGCTGAAATCGGAGGAGAAGGTGTCGGGGTATCACGCGGACAACGTGGCGCCGTCAATCATGGGGGGTTTCGTGCTGATTCGGAGCTACGAGCCCCTGGAGCTGGTGCGGCTGGAGTTCCCGGCGGAGAAGGAGCTGTTCTTCGTGCTGGTGAGCCCGGAGTTCGAGGCCCCCACGAAGAAGATGAGGGCGGCGCTGCCGGCGGAGATCGGGATGCCGCACCACGTGTGGAACTGCAGCCAGGCGGGGNCGCTGGTGGCGGCGGTGCTGCAGGGGGACGTGGTGGCGCTGGGGAAGGCCCTCTCCTCCGACAAGATCGTCGAGCCCAGGCGTGCTCCCTTGATTCCCGGCATGGAGGCCGTCAAGAGGGCTGCCATTGANGCCGGTGCTTTTGGCTGCACCATCAGCGGCGCCGGCCCCACCGCCGTTGCCGTCACAGACGACCACCACGCCGGCCTCCNCATCGGGGAGCACATGGTCCGGGCCTTCCTCGAGCACGGCAATTTGAACGCTTCTGCAAATGTGAAGCGCCTTGATCGCCTTGGTGCTAGGCTCGTTAGTGGCATCCAATTTCAAAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00059	86621	87772	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00872	thrB1	EC:2.7.1.39	Biosynthesis of amino acids	map01230
			Glycine, serine and threonine metabolism	map00260

Gene Ontology

biological_process
GO:0006566 threonine metabolic process

molecular_function

GO:0004413 homoserine kinase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000059s00006286.1	PF00288.21	GHMP_kinases_N	148	213	1.30E-12
Glyur000059s00006286.1	PF08544.8	GHMP_kinases_C	276	341	6.70E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	101.825
SRR1783600	control	102.907
SRR1783602	moderate drought stress	97.423
SRR1811619	moderate drought stress	97.381

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	91.359
DRR006520	Root Summer glycyrrhizin high producing strain	89.815
DRR006521	Root Winter glycyrrhizin high producing strain	17.152
DRR006522	Root Winter glycyrrhizin high producing strain	15.084
DRR006523	Root Summer glycyrrhizin low producing strain	43.184
DRR006524	Root Summer glycyrrhizin low producing strain	44.489
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.805
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.796

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	176.551
SRR2868004	Drought Stress (root)	138.233
SRR2967015	Control (root)	129.712

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	112.736
SRR9715740	Leaf	89.046
SRR9715741	Leaf	146.031
SRR9715739	Root	374.146
SRR9715742	Root	290.942
SRR9715743	Root	301.521

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.170
SRR8749028	MeJA induced 9h	15.254
SRR8749029	MeJA induced 9h	7.517
SRR8749030	Uninduced	17.619
SRR8749031	Uninduced	20.291
SRR8749032	Uninduced	33.421

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	198.096
SRR8400027	Control - Root	200.870