Gene detail

Gene detail information of Glyur000059s00006277

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35440.1	1.00E-178	chloride channel E
NR	XP_003545359.1	0	PREDICTED: chloride channel protein CLC-e-like isoform X1 [Glycine max]
COG	YP_007143920.1	8.00E-69	Cl- channel voltage-gated family protein [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q8GX93\|CLCE_ARATH	0	Chloride channel protein CLC-e
trEMBL	tr\|I1M627\|I1M627_SOYBN	0	Chloride channel protein {ECO:0000256\|RuleBase:RU361221}

Sequence

Transcript Sequence

>Glyur000059s00006277.1
AAGAGAAGTTGGATTGGAAGTATGTAATGTATGGTGAGGAATGGTTGGCTTAGGATGCGTAGTGGGAGTTCACCCCAGTTGGCGTTGGCAGTGGCAGCATCATCCGATTCTCGCTTCAAAATCTGACGAGGAGGCAGCGGCAGTAACAGTAACACTAACACCGACGCGATCGTGGTCATTCATCCCTTCTTCTTCTTCTTCTTCTTCTTCTTGTACAAACAGGAATCACGGGTGCTTTACAATTACAAATGGCCGAAGCAGTCCCTGGCGTCGGTTTTCCGTGCCTGACAACAGGGACGTGGAGGAGGAGGAAGGAGCTGCTTCTGCTGCTTCAGAATCAGAACAACAAGTAGAGCTAGAAATTGAATGGAAGCTCTTCACTCGAAGGATTCGAAATTCGGGAATAATATCTTCATGCCTGGTTGGTCTCCTAACTGGCGTCGCCGTCGTGCTGTTCAATAACGTTGTCCATGAAATTCGTGACTTGTTGTGGGATGGGATTCCCTATCGTGGCGCCTCGTGGTTGAGAGACGCGCCCATTGAGGCAACCTGGACAAGGGTGATTCTAGTTCCGGCTTTTGGAGGTGTTGTTGTGGCTGCGCTGAACCTCCTTCGTCGACATTTTGAAACTGAAACTCCATCCGCATCCATGTCTGCTTTCTTGAAGGCTATTGCAGCTTCTGTTACTCTAGGCACCGGTAATTCCTTGGGTCCTGAGGGTCCCAGCGTCGAGATTGGTACGTCCATTGCCAAAGGGATTGGTTCTACTTCTTTCTTTGACAAGAGTTCCGGCAGAGTGCTCTCCCTTCTGGCCTCTGGATCTGCTGCCGGCCTCTCTGCCGGTTTCAATGCTGCTGTTGCTGGTTGTTTTTTCGCTGTAGAGTCTGTCTTGTGGCCATCACCTGCAGATGCATCCCTACCTCTTACAAATACTACTTCCATGGTAATTCTTAGTGCTGTCGTAGCTTCTGTAGTTTCAGAGATTGGCCTTGGCTCTGAACCAGCCTTTAAAGTTCCAGAGTATGACTTCCGTTCTCCTGGTGGTAAGCCCTCATGGTTTTTCATTCAGATGATATATAATTTCANACATTCAGTGTTCATGCCTTTTCAGCTCCCGCTGTATTTATTGTTGGGTATTTTATGTGGCCTGGTGTCATTGGCCCTATCTTGGTGTACATCATATATGTTGACTATTTTTGACAATCTTCACAAGGCCACAGGCATTCCAAGAGCTTCATTCCCTATATTGGGAGGCTTATCAGTTGGGTTGATAGCATTGGTACATCCTGAAATCCTCTACTGGGGTTTTGAGAATGTTGACATTTTGTTAGAATCTCGGCCATTTGTTNAAGGCCTTTCCGCTGAGCTATTGCTTCAGCTAATAGCTGCCAAGATAGTTGCAACTTCTCTATGCCGTNCTTCTGGACTAGTGGGGGGGTATTATGCCCCATCTCTCTTTATCGGTGGTGCCACTGGGATGGCTTATGGAAAATTAATTGGTTTGACTGTTGCTAAGTCTAATCCTATGATTAACCTCTCTGTGTTGGAAGTGGCATCACCACAAGCTTATGGCCTGGTTGGAATGGCTGCAACTCTTGCAGGAGTTTGTCAAGTACCACTTACTGCAGTTTTGCTTCTTTTTGAATTGACACAGGACTATCGGATTGTTCTACCACTACTTGGAGCAGTAGGCTTGTCTTCATGGATTTCATCTGGACAGACAAAGAGAGACAAGGACAGGGAGACAGAAAAGGTGAAGTTAGAAAANTCAAATTCTGCTTCACTTCCAGAAACATCTCCCAGTAGTTCAATNGAGTCATCTACTGGTAATTCCTTTGCTGAAGGTGTGTCATATTTGAGTAATTTATGTCAAGTGGAAAGTTCACTTTGTGTGNAGGATGATAATGTTGAAACAGCATATTATGTAAGGAGAACATTAGTTTCAGAAGCCATGAAGACGAGATATGTGACGGTGTCAATGTGCACACCGCTTACTAAAGTAATAGATCTCATGCTTGCAGAGAAACAGTCTTGTGCAGTAATTGTTGATACTGATGATACTTTGATTGGTTTATTGACGCTTAGAGACATTCAAGAGTATGGAAAATTTGCAAAAGCAAGAAGCAAAAATCCNAAGGAGCTTTTAGTTTCTGAATTATGCCTGCTAAATGGAGGAATATGTAGTGTACCTTGTACAGCTACTCCTGATATGGAACTTCGTTATGCTCAAATGATTATGAAGGAACATGGAGTCAATCAAGTTCCAGTTGTGAGGAATATCTATGAAAGGACTTATCCAGTTGGCCTATTAGACCCCGATAGTATCAGTCTAACATGCAGTGCTTTGGCCACCAGACAGTCCCTCGGCTAATATTCCACGCTAGCACTTGGCCATCGTTAGGAGGATGAAGAGTCTGCTAGGGCTCTGACATGATATTTATTAATTGTCTATTATGGGCCTTTCTTTTTTTGATAAATTTCTACTATCTGCCTTTAACTTGTCAAATTTCATGTCATTCTGTGGTTCTACGCAGAAAAAGTTTCAAATAGAGCTCATATGTTCAGTNATGTTCGTTGCCAGTATGTAGATCGCCAAGGGAGACCCATTGTAAATATGATAAATTTGTTGTCCAACATTTATTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00059	44198	50992	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006821 chloride transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0005216 ion channel activity

GO:0005247 voltage-gated chloride channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000059s00006277.1	PF00654.15	Voltage_CLC	205	557	1.00E-63
Glyur000059s00006277.1	PF00571.23	CBS	634	685	6.10E-11
Glyur000059s00006277.2	PF00654.15	Voltage_CLC	205	535	6.60E-66
Glyur000059s00006277.2	PF00571.23	CBS	612	663	5.90E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.489
SRR1783600	control	1.362
SRR1783602	moderate drought stress	2.298
SRR1811619	moderate drought stress	2.421

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.407
DRR006520	Root Summer glycyrrhizin high producing strain	2.328
DRR006521	Root Winter glycyrrhizin high producing strain	11.651
DRR006522	Root Winter glycyrrhizin high producing strain	11.194
DRR006523	Root Summer glycyrrhizin low producing strain	2.551
DRR006524	Root Summer glycyrrhizin low producing strain	2.513
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.697
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.308

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.117
SRR2868004	Drought Stress (root)	10.813
SRR2967015	Control (root)	8.268

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.427
SRR9715740	Leaf	29.231
SRR9715741	Leaf	23.315
SRR9715739	Root	4.676
SRR9715742	Root	3.980
SRR9715743	Root	4.686

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.259
SRR8749028	MeJA induced 9h	8.254
SRR8749029	MeJA induced 9h	5.593
SRR8749030	Uninduced	10.001
SRR8749031	Uninduced	6.243
SRR8749032	Uninduced	5.885

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.977
SRR8400027	Control - Root	13.526