Gene detail information of Glyur000059s00006276.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38180.1 | 1.00E-123 | FAR1-related sequence 5 |
| NR | CAN68194.1 | 0 | hypothetical protein VITISV_036221 [Vitis vinifera] |
| Swissprot | tr|Q9SZL8|FRS5_ARATH | 2.00E-143 | Protein FAR1-RELATED SEQUENCE 5 |
| trEMBL | tr|A5BQ59|A5BQ59_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN68194.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00059 | 35772 | 43036 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000059s00006276.1 | PF03101.10 | FAR1 | 123 | 198 | 1.10E-17 |
| Glyur000059s00006276.1 | PF10551.4 | MULE | 296 | 346 | 1.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.428 |
| SRR1783600 | control | 8.184 |
| SRR1783602 | moderate drought stress | 9.641 |
| SRR1811619 | moderate drought stress | 10.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.095 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.202 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.808 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.656 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.998 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.853 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.648 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.818 |
| SRR2868004 | Drought Stress (root) | 16.885 |
| SRR2967015 | Control (root) | 16.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.073 |
| SRR9715740 | Leaf | 11.820 |
| SRR9715741 | Leaf | 10.632 |
| SRR9715739 | Root | 1.193 |
| SRR9715742 | Root | 9.077 |
| SRR9715743 | Root | 7.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.550 |
| SRR8749028 | MeJA induced 9h | 8.565 |
| SRR8749029 | MeJA induced 9h | 6.271 |
| SRR8749030 | Uninduced | 7.357 |
| SRR8749031 | Uninduced | 8.991 |
| SRR8749032 | Uninduced | 6.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.593 |
| SRR8400027 | Control - Root | 13.729 |