Gene detail information of Glyur000059s00006275 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15960.1 | 2.00E-06 | NRAMP metal ion transporter 6 |
| NR | XP_007153578.1 | 3.50E-25 | hypothetical protein PHAVU_003G047400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9C5D0|CBSX2_ARATH | 6.00E-08 | CBS domain-containing protein CBSX2, chloroplastic (Precursor) |
| trEMBL | tr|V7C5V9|V7C5V9_PHAVU | 1.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:ESW25572.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00059 | 34483 | 35915 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.790 |
| SRR1783600 | control | 33.097 |
| SRR1783602 | moderate drought stress | 37.190 |
| SRR1811619 | moderate drought stress | 37.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.919 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.033 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.455 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.235 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.534 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.994 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.682 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.714 |
| SRR2868004 | Drought Stress (root) | 7.103 |
| SRR2967015 | Control (root) | 5.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.402 |
| SRR9715740 | Leaf | 3.260 |
| SRR9715741 | Leaf | 8.294 |
| SRR9715739 | Root | 0.580 |
| SRR9715742 | Root | 2.970 |
| SRR9715743 | Root | 2.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.990 |
| SRR8749028 | MeJA induced 9h | 9.625 |
| SRR8749029 | MeJA induced 9h | 9.834 |
| SRR8749030 | Uninduced | 6.823 |
| SRR8749031 | Uninduced | 2.037 |
| SRR8749032 | Uninduced | 4.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.670 |
| SRR8400027 | Control - Root | 17.309 |