Gene detail

Gene detail information of Glyur000058s00006200

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20230.1	8.00E-25	blue-copper-binding protein
NR	XP_007155014.1	2.44E-150	hypothetical protein PHAVU_003G165800g [Phaseolus vulgaris]
Swissprot	tr\|P00302\|STEL_TOXVR	3.00E-30	Stellacyanin
trEMBL	tr\|V7CCD1\|V7CCD1_PHAVU	9.00E-151	Uncharacterized protein {ECO:0000313\|EMBL:ESW27008.1}

Sequence

Transcript Sequence

>Glyur000058s00006200.1
TGAATTGAAAGGAATACTCTTTCAACTAGAACTAGAATTCTTTACCGTCTAGGATTCTTCACCATTATTGACTTGTCTCCGTTTTTTTTTTCTCTATAAATACCAACAAAGCACATGGCCATTTGTACTACTCGAGTTCTTTCATTGGAAGAAGAACAAAGTCACAAAGAACCAAAGGAAAACACAGAGCATACTTTAGTTCTAGAAAACAGGGGCGATCCAACCTCAAAAGAACACACGGCCATGGCAAGGAACCTAAACGCCGTCGTCCTCGTGCTACTAGCAGTGGCCAACCTTCTCCACGTCTCAACGGCGCAGACGAGACACGTGGTGGGTGATAGCACCGGCTGGACCATCCCTTCCGGTGGTGCTTCATTCTATACCAACTGGGCCTCCAACAAAACCTTCACCGTAGGCGACACTCTCGTGTTCAACTTCGCGAGTGGGCAACACGACGTGGCCAAGGTAACAAAATCAGGTTTCGACGGTTGCAACGGTGGGAGTGCCCTTCAAACGGTAACCACCACTCCGGCGGACATGATGCTGAACGAGACTGGAGAACAATATTTCATTTGTACCTTCGGAACCCACTGTTCCCTTGGTCAGAAACTTTCCGTTAACGTCGGTAGGGCCTCTGCTTCTTCCCCTGTTCCCGCTCCTCAACCCACCGTTTCTCCTCCACCAAAGAGTAGCCCAACACCAACAGCAACACCAGCACCAGCACCAACCACCACCACTCCTCCACCAGCACCTGTTCCGGCTCCATCTCCATCTAACGGACCCGTTACTCACACCGTTGGAGACTCNTTGGGTTGGACCGTTCCTACCAACGGTGTTTCTGCTTACCAATCCTGGGCTTCTAACCAGTCCTTCAACGTTGGAGACATCCTTGTTTTCAACTTCCAAGTGAATGCACACAACGTGGAGGAGGTGACAAAGGGGAAATTCGATTCCTGCAACTCAACCTCTCCTATTGCTACTTATGGAAACCCACCGGTGAGGGTTACCCTTAACAAGACCGGTGAACACTACTTCATCTGTGGGGTTCCCGGACACTGCTCCGGAGGTCAAAAGCTCGCCGTCAACGTCGGCGGTAGCAGCGGCGCCGCCACTCCTCCCTCCGCCTCCGCCTCCGGTTCNCCTTCGCCGTCGTCTTCCGTTAACCCTTCTACCCCCTCTCCGACGAGTTCTCTCAGCCCACCCCCCGAGAACTCTGGTGCCGCATCTCTTGGAGTCGCTGGATTATTCGCCACACTGATCTCAGTTGCCGCTGCATTTTTCTACTAGAGAGATGAAGAATTGAGGATCCTAGTAGTTAGGGTTTAATTGTTCTCGGATTTGTGTCATTCAATTTGTGTTTCATAGATTCAGTTTTTTTGGGCGGACATTTTACAACAATAATGTTATCTTTCTGCTATAATTCCTTTTCATTCAGTTTTTGTTTTTAAATTTTTTCCTCCTTTCTGACGAGTATAATTGGTGGTGTACGGCTGTGTGAATATTTTAATAATAAATACTACTTTATTTGTTTAGAGTTAAAAGATCGTTGAACGAATTTTTAATACCTCCGGAGAAAATGGGCCCTTTGGGGTTGAAATAGGACGAGGGTTGTTANCTTAACCTCCTCTTCTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00058	455569	457389	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0009055 electron carrier activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000058s00006200.1	PF02298.12	Cu_bind_like	79	164	4.00E-25
Glyur000058s00006200.1	PF02298.12	Cu_bind_like	234	319	2.30E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	109.689
SRR1783600	control	110.097
SRR1783602	moderate drought stress	96.571
SRR1811619	moderate drought stress	96.018

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	250.298
DRR006520	Root Summer glycyrrhizin high producing strain	245.930
DRR006521	Root Winter glycyrrhizin high producing strain	11.675
DRR006522	Root Winter glycyrrhizin high producing strain	11.184
DRR006523	Root Summer glycyrrhizin low producing strain	434.232
DRR006524	Root Summer glycyrrhizin low producing strain	436.255
DRR006525	Leaf Summer glycyrrhizin high producing strain	149.768
DRR006526	Leaf Summer glycyrrhizin high producing strain	150.466

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	163.635
SRR2868004	Drought Stress (root)	200.187
SRR2967015	Control (root)	297.650

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	804.289
SRR9715740	Leaf	358.982
SRR9715741	Leaf	994.497
SRR9715739	Root	608.659
SRR9715742	Root	1234.707
SRR9715743	Root	1065.451

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	100.329
SRR8749028	MeJA induced 9h	55.968
SRR8749029	MeJA induced 9h	58.627
SRR8749030	Uninduced	67.374
SRR8749031	Uninduced	1.884
SRR8749032	Uninduced	14.697

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	305.569
SRR8400027	Control - Root	327.168