Gene detail

Gene detail information of Glyur000058s00006197.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26600.1	1.00E-147	Glycosyl hydrolase superfamily protein
NR	XP_007155020.1	0	hypothetical protein PHAVU_003G166400g [Phaseolus vulgaris]
Swissprot	tr\|Q9ZQG9\|E1314_ARATH	8.00E-102	Glucan endo-1,3-beta-glucosidase 14 (Precursor)
trEMBL	tr\|V7CA30\|V7CA30_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27014.1}

Sequence

Transcript Sequence

>Glyur000058s00006197.1
NAGAGAGAGAGAGACTGAGTAATGGAAACGCTGAGGGTGTAGTTAGTTCAATGCTGCAAAGTGTTTCTTCGTCTTATGGCATGCCTGGGGAGGAAGAAGAANCAGTGCGTACAGGGCCAAGGCGTTTCAATTCCCTATTTTGACACTGTTTTGGACCACCCCACAACCGTACTTGCACACCTTCTTCATGATCACTGCGAATCACATCGCTTTTCGCTGCTTTCTCTCACACCCCATGATGACTTTGCGCTTCTCTGAGTCTGACCCCTTCNTCATACTCTTCTTGCTCTTCTTCACTCAAATTGCTTCAGTGCAAGCATTCACTGGAACCTATGGTATAAATTATGGGAGGATTGCAAACAACATCCCTTCACCTGAAGAAGTTGTTACTCTTCTCAAAGCTGCAAAAATAAGGAACGTTAGAATCTATGATGCTGATCACAGTGTTCTCAAGGCCTTTAGTGGAACTGGGCTTGATATTGTAATTGGACTTCCCAATGGACAGCTGCAAGACATGAGTTCGAATGCGGATCATGCTTTGAACTGGGTGAAAGACAATGTGCAGTTGTTTCTCCCTGGGACACGCATCCGCGGTATTGCTGTGGGCAATGAGGTTTTGGGCGGGGATGACTTTGCTTTGTGGGGAGTTCTTTTGGGTGCTGTAAAAAATATTTATAATGCTACCAAGAAACTCCATTTGGATAAGCTAGTTCAGATTTCTACTGCAAACTCNTTTGCTGTTTTTGCCGATTCCTACCCTCCCTCCTCTTGTAAATTCGCCGATAATGTTAATCAGTATATGAAGCCNCTACTGGAGTTCTTCCAACAAGTTGGCTCTCCTTTCTGTTTGAATGCTTATCCTTCCCTAGCCTATGCGAGTGATCCAGAACACATTGATATAAATTATGCTCTTTTTCAACCAACAAAGGGAATTTATGATCCGAAGTATAAGCTGCANTATGATAACATGCTTGATGCTCAGATTGATGCAGCTTATGCTGCTTTGGAGAATGCTGGATTTTACAAAATGGAAGTCATAGTTACTGAGACNGGGTGGGCCTCAGATGGAGACCAAAGTGAAGCTGGAGCAAATGTAACTAATGCAAGGACATATAATTATAACCTCCGTAAAAGGCTTGCGAAGAAGAAAGGAACCCCACATAGGCCTAAAAATGTTGTGAAGGCATACATTTTTGCAATTTTCAATGAGAATTTGAAGCCTGGTCATTTCTCTGAGAGGAACTATGGACTATTCAAGGCTGATGGGAGTATATCATATGACATTGGGTTTCATGGACTTAATGCTGGAGATTCATCTCTTTTGTCTCTTAAGCTTGCACTGAATATATCAAATTGCTATGATTTCTGTCCTAATCATGCATTGCTCTGTGTTAGACAACCATAATATCAATGCTCAAGGTTTGTCCCAGTCCTACACCATGGTACTGTGTCTATTTGCTCTGATACTGCTGATTTTCTAGAGTCAGTGACCTTCGAGGTAAACCAGCTCCTGGCAATAAAAGGGGTTTGGCTTGGCTTGGCTGGCTCTCACCGTACATCAAAATTATGNCATTGATTGTCATATTTCATAAAGCAATATATCTAGCAATTTTGATATATTTTTCCCATACCTGGAAAATGCGTGATTATTTATCCTGATAAAGCATTTTCCCCTTCTTTAATTCGATGAGATCTAGAACTTTTCAGTTTTAAATACATTCAAAATTTTCAGCACTCAAATTTTATTTTTATCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00058	441186	445229	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000058s00006197.1	PF00332.13	Glyco_hydro_17	50	368	1.70E-91

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.734
SRR1783600	control	39.013
SRR1783602	moderate drought stress	29.183
SRR1811619	moderate drought stress	29.181

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.804
DRR006520	Root Summer glycyrrhizin high producing strain	50.127
DRR006521	Root Winter glycyrrhizin high producing strain	67.100
DRR006522	Root Winter glycyrrhizin high producing strain	65.009
DRR006523	Root Summer glycyrrhizin low producing strain	90.557
DRR006524	Root Summer glycyrrhizin low producing strain	90.282
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.979
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.104

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.556
SRR2868004	Drought Stress (root)	20.424
SRR2967015	Control (root)	25.164

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.490
SRR9715740	Leaf	26.120
SRR9715741	Leaf	28.420
SRR9715739	Root	15.306
SRR9715742	Root	56.255
SRR9715743	Root	48.101

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.143
SRR8749028	MeJA induced 9h	10.313
SRR8749029	MeJA induced 9h	10.916
SRR8749030	Uninduced	5.533
SRR8749031	Uninduced	1.428
SRR8749032	Uninduced	4.354

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.507
SRR8400027	Control - Root	23.340