Gene detail information of Glyur000058s00006194 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02530.1 | 2.00E-63 | chloroplast thylakoid lumen protein |
| NR | AFK39859.1 | 1.35E-106 | unknown [Medicago truncatula] |
| Swissprot | tr|O22773|TL16_ARATH | 1.00E-78 | Thylakoid lumenal 16.5 kDa protein, chloroplastic (Precursor) |
| trEMBL | tr|I3SHW7|I3SHW7_MEDTR | 5.00E-107 | Uncharacterized protein {ECO:0000313|EMBL:AFK39859.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 425438 | 431482 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.841 |
| SRR1783600 | control | 14.035 |
| SRR1783602 | moderate drought stress | 22.048 |
| SRR1811619 | moderate drought stress | 22.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.440 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.784 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.144 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.510 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.515 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.325 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 65.177 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 60.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.796 |
| SRR2868004 | Drought Stress (root) | 20.696 |
| SRR2967015 | Control (root) | 17.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 68.013 |
| SRR9715740 | Leaf | 64.558 |
| SRR9715741 | Leaf | 52.474 |
| SRR9715739 | Root | 2.215 |
| SRR9715742 | Root | 10.510 |
| SRR9715743 | Root | 9.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.773 |
| SRR8749028 | MeJA induced 9h | 40.883 |
| SRR8749029 | MeJA induced 9h | 36.520 |
| SRR8749030 | Uninduced | 34.414 |
| SRR8749031 | Uninduced | 39.776 |
| SRR8749032 | Uninduced | 30.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.297 |
| SRR8400027 | Control - Root | 24.009 |