Gene detail

Gene detail information of Glyur000058s00006189

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02630.1	7.00E-124	Nucleoside transporter family protein
NR	XP_003609351.1	0	Equilibrative nucleoside transporter [Medicago truncatula]
Swissprot	tr\|Q84XI3\|ENT8_ARATH	1.00E-177	Equilibrative nucleotide transporter 8
trEMBL	tr\|G7JE40\|G7JE40_MEDTR	0	Equilibrative nucleoside transporter 6 {ECO:0000313\|EMBL:AES91548.1}

Sequence

Transcript Sequence

>Glyur000058s00006189.1
GGCATATATTATAATTTGATCCTACATTACTTTTTAACCTGTTCTAAAGATATATCTTTTGCAACTTGTGGATTACGGAGGCTGCAAGGCAACAAACATTTATACTGAAAGGACTATTGTGATGAATAACAAGCATCCAATTTTATGTTAATTGGGTGTCAAGTACATAAGGTTGCATTGCAAGACAGCATACACATGTGCGGACTGTGTGACCAAATGGTATATCTAATATCACCCATCCATTGCTGTCCCCACAGAGCATAATTTTTCTTCTTCATACATTAAGCATATTGATTCCATGTCCAACCCCATCAATCACATGAGTGCGTACGTGTGTGTATATACACGTATATAAGTGCTGGCAGATCTATCAATTAGTCCCAAACTAGCTCTACCATATCAGTATNACTACTTGTATCAGTCACTTGTCTAACAATGCCAACATCTGCACAATACTTNTAACTTTCAAGTTAGAGTCTTTCCACAGATAACCATCACTTCAGTATCAACCACGAATGCCCAGAAGGTGAAAAATAAAAAAAATGGAAGCTGTAAAGCTGGTCTCAAGTGATCCAAGTGAAAGAAGAGACACCTACAGAGTTGCTTACATAATCTATTTCTTGCTTGGTGCTGGAAACTTGTTTCCTTGGAATGCTTTCATCACAGCAGTTGATTACTTTGCCTACCTCTACCCAACAAGTCACATAGAAAAGGTATTCTCTGTGGCTTATATGGTGTCATCTGTGTTGGTACTTCTTGTGATGATGAGCTGGGGAGGTTGGNGTAAAACAACATTGAGGCTGAGAATGAACTTGGGGTTCTCCATGTTTGTTATGTCTCTCATGGTAGCACCTGTCATTGACTGGGCCTCCAGTAGCACCAAGCTTAAAGAGAGACCAAGTGGTGCTTATGGCATGACAGTTGCAGCAGTTGTAGTGTGTGGCTTAGCAGATGGAGTGGTAGGTGGAAGCTTGATAGGATCAGCAGGAAAGCTCCCTAAACAGTATATGCAAGCTGTTTTTGCGGGAACTGCTTCCTCAGGTATTATAATTTCAATCTTGAGGATAATAACCAAGGCATCACTCCCACAAACCCCAAAGGGTCTCAAAATAAGTGCCCACTTGTACTTCATGGTGGCCACAGTTTTCCTCCTGTGTTGCATTGTCTTTAGCAACTTGCAGCACAAGTTACCAGTCATGCAGCAGTATCATCAGGGGGTTCTTCAGGAGAGCGCCTTGTGCTCGGGGACGAAATTTTGGGCAGTGGCAGGAAAAATCAAGGGTCCAGCTTTCGGAATCTTCATAATCTACATTGTGACTCTGTCAATTTTCCCAGGATTTATTGCAGAAGATCTTAAATCCATGCTTCTTAAGGATTGGTACCCTATTATACTGATAACAGTTTACAATTTAGCTGATCTGATGGGGAAGTCATTAACTGCTTTCTATGTTCCACAATCTATCACAAGGGCTATATGGGCTGCAACAGCTAGGCTCCTATTCTATCCACTCTTTATAGTTAGTCTTCATGGACCCAATTGGCTGAAAACAGAAGTGCCAATAGTGGTTCTGACATTTCTGCTAGGATTTACCAATGGGTACCTCACCAGTGTGCTTATGATTCTAGCTCCCAAGTCAGTGCCCTTCTCAGAATCAGAGTTATCTGCTATTGTGATGACTGCGTTCCTCGGCTTCGGCTTGGTTGGTGGTTCAGTCCTGGGCTGGTTCTGGATCTTATGAAGGCCTAGTTCTTGCTGTAATAAAATGAGCAAAGGGAAGTAGCATTCATCGGAGACTGGGGGGCAAAAAGGCAATAGCTCTGTTACACCAACAACTAGGTTGTTTCTTTGTTAGTTTTCTGATGTTTTTGAGTGCCAAATCTCAGTGNGAGAACATGAGAAACGTGGACATTATTAGGAAACTCCTAGGCATGTAAAATATAATGTAACGAAAATCCGTAAGCGGAGAATGAAATTTAAGATCTGTGTCAATAGAAAGAGTACCTTCTTGCGATAAATGCAAACAAGTTTTCTCTTTAACAGGAAGAAAAATGCAACAACATACTGTTCCAGGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00058	389082	392089	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0005337 nucleoside transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000058s00006189.1	PF01733.13	Nucleoside_tran	128	228	5.20E-21
Glyur000058s00006189.1	PF01733.13	Nucleoside_tran	237	396	2.30E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.146
SRR1783600	control	2.153
SRR1783602	moderate drought stress	3.206
SRR1811619	moderate drought stress	3.148

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.837
DRR006520	Root Summer glycyrrhizin high producing strain	15.422
DRR006521	Root Winter glycyrrhizin high producing strain	0.537
DRR006522	Root Winter glycyrrhizin high producing strain	0.524
DRR006523	Root Summer glycyrrhizin low producing strain	28.590
DRR006524	Root Summer glycyrrhizin low producing strain	28.861
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.513
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.412

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.952
SRR2868004	Drought Stress (root)	11.585
SRR2967015	Control (root)	8.776

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.799
SRR9715740	Leaf	4.588
SRR9715741	Leaf	7.468
SRR9715739	Root	2.005
SRR9715742	Root	27.629
SRR9715743	Root	21.811

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.130
SRR8749029	MeJA induced 9h	0.029
SRR8749030	Uninduced	0.183
SRR8749031	Uninduced	0.055
SRR8749032	Uninduced	0.076

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.621
SRR8400027	Control - Root	6.754