Gene detail information of Glyur000058s00006183.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25490.1 | 0 | EIN3-binding F box protein 1 |
| NR | XP_003542675.1 | 0 | PREDICTED: EIN3-binding F-box protein 1-like [Glycine max] |
| COG | YP_008925.1 | 1.00E-22 | hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q9SKK0|EBF1_ARATH | 0 | EIN3-binding F-box protein 1 |
| trEMBL | tr|I1LZX2|I1LZX2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G23510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 358012 | 361587 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000058s00006183.1 | PF12937.2 | F-box-like | 67 | 98 | 2.10E-06 |
| Glyur000058s00006183.1 | PF13516.1 | LRR_6 | 190 | 214 | 0.097 |
| Glyur000058s00006183.1 | PF13516.1 | LRR_6 | 242 | 265 | 8.40E-05 |
| Glyur000058s00006183.1 | PF13516.1 | LRR_6 | 562 | 581 | 1.8 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.890 |
| SRR1783600 | control | 28.422 |
| SRR1783602 | moderate drought stress | 30.432 |
| SRR1811619 | moderate drought stress | 30.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.055 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.969 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 294.588 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 288.299 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.012 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.245 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.182 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.793 |
| SRR2868004 | Drought Stress (root) | 30.236 |
| SRR2967015 | Control (root) | 20.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.088 |
| SRR9715740 | Leaf | 7.973 |
| SRR9715741 | Leaf | 6.400 |
| SRR9715739 | Root | 32.594 |
| SRR9715742 | Root | 34.399 |
| SRR9715743 | Root | 33.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.502 |
| SRR8749028 | MeJA induced 9h | 109.168 |
| SRR8749029 | MeJA induced 9h | 73.198 |
| SRR8749030 | Uninduced | 6.881 |
| SRR8749031 | Uninduced | 14.548 |
| SRR8749032 | Uninduced | 34.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 60.477 |
| SRR8400027 | Control - Root | 57.221 |