Gene detail information of Glyur000058s00006181 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20180.2 | 3.00E-26 | Ribosomal protein L36 |
| NR | XP_004508490.1 | 1.81E-59 | PREDICTED: uncharacterized protein LOC101508273 isoform X1 [Cicer arietinum] |
| COG | NP_440648.1 | 6.00E-14 | 50S ribosomal protein L36 [Synechocystis sp. PCC 6803] |
| Swissprot | tr|Q9MUU8|RK36_MESVI | 2.00E-13 | 50S ribosomal protein L36, chloroplastic |
| trEMBL | tr|G7JE29|G7JE29_MEDTR | 8.00E-55 | Ribosomal protein {ECO:0000256|RuleBase:RU000570} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 332760 | 334177 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000058s00006181.1 | PF00444.13 | Ribosomal_L36 | 22 | 59 | 5.50E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 41.540 |
| SRR1783600 | control | 42.083 |
| SRR1783602 | moderate drought stress | 96.899 |
| SRR1811619 | moderate drought stress | 95.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 86.539 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 85.656 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 132.072 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 133.341 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 84.210 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 92.473 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.439 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 51.050 |
| SRR2868004 | Drought Stress (root) | 44.258 |
| SRR2967015 | Control (root) | 38.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.030 |
| SRR9715740 | Leaf | 31.925 |
| SRR9715741 | Leaf | 28.619 |
| SRR9715739 | Root | 47.958 |
| SRR9715742 | Root | 44.237 |
| SRR9715743 | Root | 48.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 51.879 |
| SRR8749028 | MeJA induced 9h | 31.399 |
| SRR8749029 | MeJA induced 9h | 44.727 |
| SRR8749030 | Uninduced | 16.137 |
| SRR8749031 | Uninduced | 5.249 |
| SRR8749032 | Uninduced | 14.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 53.307 |
| SRR8400027 | Control - Root | 43.194 |