Gene detail information of Glyur000058s00006179 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G13730.1 | 4.00E-93 | Ypt/Rab-GAP domain of gyp1p superfamily protein |
| NR | XP_004508495.1 | 0 | PREDICTED: TBC1 domain family member 13-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|K7M077|K7M077_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G23561.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 311495 | 314799 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000058s00006179.1 | PF00566.13 | RabGAP-TBC | 137 | 389 | 4.00E-34 |
| Glyur000058s00006179.2 | PF00566.13 | RabGAP-TBC | 137 | 354 | 2.40E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.102 |
| SRR1783600 | control | 2.082 |
| SRR1783602 | moderate drought stress | 3.489 |
| SRR1811619 | moderate drought stress | 3.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.993 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.898 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.412 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.948 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.545 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.608 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.560 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.191 |
| SRR2868004 | Drought Stress (root) | 7.771 |
| SRR2967015 | Control (root) | 7.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.782 |
| SRR9715740 | Leaf | 4.354 |
| SRR9715741 | Leaf | 3.853 |
| SRR9715739 | Root | 0.918 |
| SRR9715742 | Root | 1.915 |
| SRR9715743 | Root | 1.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.520 |
| SRR8749028 | MeJA induced 9h | 1.823 |
| SRR8749029 | MeJA induced 9h | 0.649 |
| SRR8749030 | Uninduced | 1.153 |
| SRR8749031 | Uninduced | 0.524 |
| SRR8749032 | Uninduced | 0.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.049 |
| SRR8400027 | Control - Root | 8.090 |