Gene detail information of Glyur000058s00006173 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26660.1 | 1.00E-87 | SPX domain gene 2 |
| NR | AFK34749.1 | 4.06E-180 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8LBH4|SPX1_ARATH | 5.00E-127 | SPX domain-containing protein 1 |
| trEMBL | tr|I3S3A7|I3S3A7_LOTJA | 2.00E-180 | Uncharacterized protein {ECO:0000313|EMBL:AFK34749.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 273952 | 276460 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000058s00006173.1 | PF03105.14 | SPX | 1 | 110 | 7.70E-18 |
| Glyur000058s00006173.1 | PF03105.14 | SPX | 108 | 162 | 3.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.955 |
| SRR1783600 | control | 6.050 |
| SRR1783602 | moderate drought stress | 10.978 |
| SRR1811619 | moderate drought stress | 11.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.569 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.363 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.955 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.942 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.704 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.539 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.225 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 68.697 |
| SRR2868004 | Drought Stress (root) | 22.457 |
| SRR2967015 | Control (root) | 35.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.964 |
| SRR9715740 | Leaf | 20.263 |
| SRR9715741 | Leaf | 15.736 |
| SRR9715739 | Root | 5.750 |
| SRR9715742 | Root | 5.584 |
| SRR9715743 | Root | 5.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.056 |
| SRR8749028 | MeJA induced 9h | 0.528 |
| SRR8749029 | MeJA induced 9h | 1.627 |
| SRR8749030 | Uninduced | 4.971 |
| SRR8749031 | Uninduced | 6.299 |
| SRR8749032 | Uninduced | 4.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 106.928 |
| SRR8400027 | Control - Root | 172.444 |