Gene detail

Gene detail information of Glyur000058s00006171.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60900.1	5.00E-79	receptor-like protein kinase 1
NR	XP_004508499.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Cicer arietinum]
COG	YP_001958461.1	7.00E-25	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q39202\|RLK1_ARATH	9.00E-89	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (Precursor)
trEMBL	tr\|G7JCZ7\|G7JCZ7_MEDTR	0	Lectin kinase family protein {ECO:0000313\|EMBL:AES91506.1}

Sequence

Transcript Sequence

>Glyur000058s00006171.1
ATGGCTTCCACCCCTGTTCTGTTCTTACTGTTCTTCATACCATTTACAATTACAATAGCAGCCACTGCTGAAAAAAACCACTCCAGTGTCATTAAGTTGGGGTCTTGGCTCTCTCCTAAAGGCTATCATACTTCATGGGCGTCAAGTTCTGGCCATTTTGCTTTTGGGTTTTACCCACAAGGTAATGGCTTTGCTGTTGGAATATGGTTGGTTAGTCCATCTGAAAACACAACCACCNTTGTCTGGACTGCTAACCGTGATACTCCACCAGTCTCCTCTAGCTCTGCATTGAATTTGACCAACNAAGGCTTGCATCTTCGAAATGGAGAGGAGGACTTATATCTCAATTTAGTCCCAAGAGATTCATCTCCATATTCAAGAAATTCACCTTCAGATTCAGAGCCAGTTGCTTCCGCATCTATGCATGATTCTGGAAACTTTGTGCTTTATGATAAGCATTTTAATGTTATCTGGCAAAGCTTTGATCACCCAACTGATACCATACTAGGATGTCAGAATTTAACTTCTGATGATGATCTGGTCTGTAATTGTGATTGCGGGGGAGCATTGTATTCGAGTGGCAACTGCAACAAATATAGGCTTCCACTTATATATGGAAGGATTAAAAATGACTCAACCGTGGCCCTCTTAAAGATTCCTTCAGGAATTGTCATCACTAGAATACCTCCAACTTCAAACAACACCGATGTGCCTGTGCCTAAGCCTATGGTCGTTGTTGACAACAAGAGAAGTCTGATAATGATCCTAGCCTTTACTTTGGGTTGCATTTCCTTGTTTTGTTTGGTCATTGCGGTTTCCATTTTCTTCACTTACAGGCGTCAAGTTTCCAGGTATAAAACGTTGTCTGCAAGTGAAAATCTGGGCTTTACCGAAGAATGTTCTTTGCAATCATTTTCTTTTGATGAACTTGCGAGATCAACTGGGGGCTTCACAGAAGAGATAGGTAGAGGATCATTTGGAGCTGTTTATAAGGGCACAATAGGTGACAGTAACAGAATGGTTGCTGTCAAGAAACTGGAGAGAATAGCTGATGATGGGGAGAGGGAATTCCGAGCGGAAATTACAGCCATTGCTCGAACTCATCACAGGAATTTGGTTAAGCTTATTGGTTTTTGTGTGGATGGATCTAGGAAGCTTCTTGTTTATGAATATCTCAGCAACGGGTCTCTTGCAAATCTTCTCTTTGAAGGGGACATGCGCCTGTCTTGGAAAGAGAGAATAAAAATCGCATTGGACGTGGCCAGAGGACTCCTGTATCTGCACGAAGAGTGTGAAGTCCGAATCATCCATTTCAATATAAAGCCTCGNAATATACTTATGGATGAAGCATGGACTGCNAAAATCTCTGATTTTGGATTGGCAAGGCTATTAAAGCGGGGCTACTCAAGAATGGAAAAGGGGGATGATGGCACAAGCGNGTACTTGGCACCTGAATGGCAGAAGGATGCACCGGTATCAGTAAAAGCTGACATTTACAGTTTTGGCGTGGTGTTGTTGGAGATTGTCTGCCGCAGAAGCAGTATAGAGATAAATGTTTCCTCGGCTGAGGAGATCCTTCTTTCCAGCTGGGTGTACCAGTGCTTTTCAGCAGGCCAGATAAATAAGCTTATTACACACAATGAAGATGTTGATTGGAAGATATTGGAAAGAATGGTGAAGGTGGGGCTGTGGTGTGTGCAAGACCATCCATCTCTTCGTCCTTCAATGAAGAATGTCATCTTGATGCTGGAAGGATTGAAAGATATTCCGGTCCCTCCCTCTCCAACCCGCTTGGTGGAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00058	266593	269243	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000058s00006171.1	PF01453.19	B_lectin	78	176	5.60E-17
Glyur000058s00006171.1	PF07714.12	Pkinase_Tyr	317	581	4.80E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.564
SRR1783600	control	0.615
SRR1783602	moderate drought stress	0.041
SRR1811619	moderate drought stress	0.021

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.174
DRR006520	Root Summer glycyrrhizin high producing strain	0.178
DRR006521	Root Winter glycyrrhizin high producing strain	0.062
DRR006522	Root Winter glycyrrhizin high producing strain	0.060
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.972
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.070

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.157
SRR2868004	Drought Stress (root)	0.357
SRR2967015	Control (root)	0.170

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.157
SRR9715740	Leaf	8.121
SRR9715741	Leaf	27.602
SRR9715739	Root	1.530
SRR9715742	Root	1.132
SRR9715743	Root	1.209

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.018
SRR8749029	MeJA induced 9h	0.082
SRR8749030	Uninduced	0.106
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.425
SRR8400027	Control - Root	0.579