Gene detail

Gene detail information of Glyur000058s00006157

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13690.1	0	alpha-N-acetylglucosaminidase family / NAGLU family
NR	XP_007138123.1	0	hypothetical protein PHAVU_009G182100g [Phaseolus vulgaris]
COG	YP_005009197.1	1.00E-79	Alpha-N-acetylglucosaminidase, Alpha-L-fucosidase [Niastella koreensis GR20-10]
trEMBL	tr\|K7KVU8\|K7KVU8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G19791.1}

Sequence

Transcript Sequence

>Glyur000058s00006157.1
ATGGCAAAATGCTGTCTGCTTCTGATGAAACTCCTTCCTTCGGAATCGCTTCTTCTTCTTCTTTTTATTTCTTTCACGTTCCCAATTCCACAATCCGTAACCGTCATGGAGTCACCATTTGTCGCTGTTTCTCTCATCTTCGTCTTCGTCTTCTCAGTAATCTCTTCCTCCGAATCTTCCACCGCCGGCGTTGACGCCATCTCCGGCCTTCTTCAAATCCAAGACCGCGAGAGGGCTCTTCCCTCCGTCCAGGAAGCCGCCGCTCGCGGCCTCCTCCTCCGCTTGCTCCCTTCCCATTCCTCCAGCTTCNACTTCCGGATCCTCTCCAAGGCATTTCAATTTTCTCTCCATAAGCAATGCCGCGGTGAATATTGTTTCGTGATAAAAAACCATCCTAATTTCGCAAGACAACAAGGGAGTCCTCAAATTCTAATTGAAGGGACAACGGGAGTGGACATCGCCGCCGGTTTGCACTGGTATCTGAAGCGTTGGTGTGGTTCACACATATCTTGGGACAAAACTGGTGGCTCCCAACTATTTTCAGTACCCAATGTGNGGTTTCTGCCACGTGTTCCCGACGCCGGAATCTCAGTCCAGAGGTTTACTCCGTGGAGCTATTACCAAAATGCTGTTACGTCTAGCTATTCTTTTGCTTGGTGGGACTGGACAAGATGGGAAAAGGAAATTGACTGGATGGCTCTGCAGGGTGTCAACTTGCCACTTGCATTTACGGGACAAGAGGCTATCTGGCAGAAAGTGTTCAAGGAGAAATTTAACATAAGCATTTCTGNTTTGGATGATTTCTTTGGAGGCCCCGCATTTCTTGCATGGTCTCGTATGGGAAATTTACATAGATGGGGTGGACCACTGCCACAGAGCTGGTTTGATCAACAATTAATCTTACAGAAGAAAATTCTTGCCAGAATGTATGAGCTTGGAATGACACCTGTCCTGCCAGCTTTTTCTGGAAATGTACCTGCGGCACTGAAATATATATTTCCATCAGCAAAAATAACACGCTTGGGAAATTGGTTTTCTGTTAAGAATGACCTCAAATGGTGCTGCACTTATCTTCTTGATGCAACTGATCCCTTGTTCATTGAGATCGGGAAAGCATTTATTGAACAACAATTGCAAGAGTATGGAAGAACCAGCCACATATACAACTGTGATACCTTTGATGAGAACACCCCACCCATTGATGATCCAGAGTACATTTCTTCATTAGGTGCGGCAGTCTTTAAAGGAATGCAGAATGGTGACAATGGTGCTGTTTGGTTGATGCAGGGATGGCTATTTTCATATGATCCGTTCTGGAGACCTCCCCAAATGAAGGCCCTTTTACATTCTGTTCCTGTCGGAAAGCTGGTGGTTCTTGACCTGTTTGCCGAAGTAAAACCCATATGGATTACCTCAGAACAGTTTTATGGAGTTCCCTATATCTGGAAAGTTGGAGTTGGAATGTCAATGGAAGGAATAGAACAGAATCCCATTGTCTATGATCTGATGTCTGAAATGGCATTTCAACACAAGAAAATTGATGTTAAGGCGTGGGTTGATTTGTATTCAANTAGACGATATGGAAGACAAGTTCCTTTAATACAAGAGGGATGGAATGTCTTATATCACACTGTTTACAATTGCACTGATGGAGCCTATGACAAAAACAGAGATGTCATTGTATCATTCCCAGATGTAGACCCTTCCTTAATTTCAGTACAGCATGAACGGTCTCGCCACTATGGCAAGCCATTCTCGAGAACAATTATCAAGGAAATAACTGATTCATTCGATCGACCTCATTTATGGTATTCAACTTCTGAAGTAATTTATGCACTGGAGCTATTTATAGCTAGTGGAGATGAACTTTCAAAAAGTAATACTTATAGGTATGACCTTGTTGATCTCACCAGACAAGTCTTAGCAAAATATGCAAATCAGTTGTTCTTAAAGGTCATAGAGGCATACCAATCACACGACGTTCATGGAGTGACCCTACTCAGCCAGAGATTTCTGGATCTAGTGGATGATTTGGNCACACTGTTGGCTTGCCATGATGGATTTCTTCTGGGCCCTTGGTTAGAAAGTGCAAAGCAACTGGCTCAAAATGAAGAACAGGAGAGACAGTTTGAGTGGAATGCTAGAACACAAATCACCATGTGGTTTGACAACACAGAGGAGGAAGCCAGTCTGCTTCGTGACTATGGAAACAAGTACTGGAGCGGGCTTCTTCATGATTACTATGGCCCCAGAGCTGCTATTTATCTTAAATATTTAAGAGAAAGCTTAGAAACAGGCGAGGATTTCAAGCTAAAGGAATGGAGGAGGGAGTGGATAAAGCTTACCAATGATTGGCAAAGCCGTAGGAATATATTTCCAGTTGAAAGTAGAGGAGATGCTCTAAANGCTTCTCGGTGGCTCTTCAATAAATACCTGAACCTGAGCAATCCTGAGACGAAGCTTACACTGGAGAACTGGACTGAACGCAAACCAGTTAAATTTCAATGAACTATACTTACATGTATATGAAACCAAGACCACTTTGGTAACCAGGTTCACTTCTCTCCAGATTCTCATCTTCCATATTCCGATGTCATGTTTTTTTCTTTTCTGGAAATTACTTTGCCGGAGTGGAAAGGAAATTGTAGCTTTCCGGTTCGTGCAAAATATGTATTACAAACCTTCGAGACAGCTTTTCTTCTGATTGACGAGAAAATAAGAATCCGGCCCATTGATTAATATTAATTGACGATCAGGCAAGATGTATTTGTATGAATGAATCAAGTCTTTCAAATTAATTTTTGAAACATTATTTTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00058	198890	208761	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH89

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01205	NAGLU	EC:3.2.1.50	Glycosaminoglycan degradation	map00531
			Lysosome	map04142

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000058s00006157.1	PF12971.2	NAGLU_N	84	179	5.90E-19
Glyur000058s00006157.1	PF05089.7	NAGLU	206	482	4.10E-112
Glyur000058s00006157.1	PF05089.7	NAGLU	484	511	1.80E-05
Glyur000058s00006157.1	PF12972.2	NAGLU_C	518	811	1.10E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.588
SRR1783600	control	2.760
SRR1783602	moderate drought stress	10.762
SRR1811619	moderate drought stress	10.538

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.557
DRR006520	Root Summer glycyrrhizin high producing strain	18.365
DRR006521	Root Winter glycyrrhizin high producing strain	25.976
DRR006522	Root Winter glycyrrhizin high producing strain	25.145
DRR006523	Root Summer glycyrrhizin low producing strain	9.689
DRR006524	Root Summer glycyrrhizin low producing strain	9.793
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.964
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.828

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.066
SRR2868004	Drought Stress (root)	20.313
SRR2967015	Control (root)	11.942

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.031
SRR9715740	Leaf	3.465
SRR9715741	Leaf	8.051
SRR9715739	Root	0.616
SRR9715742	Root	4.177
SRR9715743	Root	4.166

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.730
SRR8749028	MeJA induced 9h	59.866
SRR8749029	MeJA induced 9h	36.542
SRR8749030	Uninduced	51.399
SRR8749031	Uninduced	92.964
SRR8749032	Uninduced	42.944

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.431
SRR8400027	Control - Root	6.573