Gene detail

Gene detail information of Glyur000058s00006154

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74920.2	0	aldehyde dehydrogenase 10A8
NR	XP_007138125.1	0	hypothetical protein PHAVU_009G182300g [Phaseolus vulgaris]
COG	YP_004677560.1	7.00E-164	betaine aldehyde dehydrogenase 1 [Hyphomicrobium sp. MC1]
Swissprot	tr\|Q9S795\|BADH1_ARATH	0	Betaine aldehyde dehydrogenase 1, chloroplastic (Precursor)
trEMBL	tr\|V7AX04\|V7AX04_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW10119.1}

Sequence

Transcript Sequence

>Glyur000058s00006154.1
CTTTTTGGAGTTTGTGCAAAAATTTTACNGTAACTTTAGCGTTAATGTCACTGTAGTGTACTGTATCAATCTGGGAGGAGATTTAATATAACTATAGATAGATTAAATAAATAAACAGAGTCGTGAGCTGAGCATGAACATGACGTAGCCTCAACCTTTATTAATCTTATCATGGATCATTATTGATCAAATATTCCGAGAAAACAGAAACACAGCTGAGAGGGAGTGAGTGAAAGAGAGAGAGAGAGGAGAGAAAATGGCGATCCCAGTACCNAGGAGGCAACTATTCATAGATGGAGAGTGGAAAGTCCCTCTCCTCAACAACAGGATTCCAATCATCAATCCCTCCACTGAAAACATAGAAGATGTTGACCTTGCTGTGGATGCTGCTACAAGAGCCCTGTCCCGTGACAAGGGCAGAGATTGGTCAAAAGCTTCTGGCTCCGTTCGTGCTCGCTATCTTCGAGCCATCGCTGCAAAGATAACGGAGAAACAGAATGAACTAGGAAAACTTGAAGCAATTGATTGTGGAAAACCACTGGATGAAGCACTAGCAGACCTGGATGATGTTATTGCTTGTTTTGAGTACTATGCTGGGCTTGCCGAAGGGTTGGATGCAAAGCAGAAGGCTCCACTACCTCTTCCTATGGAGACCTTCAGGAGCTATGTTCTCAAGGAGCCCATTGGAGTTGTCGCATTAATTACTCCATGGAACTATCCTCTCTTAATGGCTACGTGGAAAGTTGCTCCTGCTCTGGCTGCTGGTTGTGCTGCAATATTGAAGCCTTCTGAATTGGCATCTGTGACCTGTTTGGAGCTAGGTGAAATATGCAGAGAAGTGGGCCTTCCTCCAGGTGTCTTAAATATTGTCACTGGATTAGGCCATGAAGCCGGTGCTTCTTTGGCATCCCATCCTGATGTAGACAAGATTTCCTTTACTGGTAGCTCTGTTACTGGGAGCAAGATTATGACAGCCGCAGCACAGCAAGTCAAGCCTGTTTCACTAGAGCTCGGCGGAAAAAGCCCAATCATTGTTTTTGAGGATGTTGACCTTGATAAGGTTGCTGAATGGACCATCTTTGGCTGCTGCTTTACAAATGGTCAGATGTGCAGTGCAACATCTCGCCTTATTGTGCATGAAAGTATAGCAACAGAATTCTTGGATAGGCTTGTGAAATGGGCCAAAAACATCAAAATTTCAGATCCCATGGAAGAAGGTTGCAGGCTAGGCCCTATTGTCAGTGAAGGACAGTATAAAAAAGTGTTGAATTTTATCTCAACTGCNAAGAGTGAGGGTGCAACAATTTTGACTGGTGGGAATCGCCCAGAGCATTTAAATAAGGGATACTATGTTGAACCAACCATCATAACTGATGTGACTACCTCAATGCAAATTTGGAGAGAAGAAGTTTTTGGACCTGCTTTGCAAGCTGGAGTTGTATGGATCAATTGTGCTCAACCAAGCTTCATTCAAGCCCCATGGGGAGGCATTAAACGTAGTGGTTTTGGTCGTGAATTAGGAGAATGGGGACTTGATAACTACTTGAGTGTGAAGCAAGTTACTAGGTACATATCTGAAGAACAGTGGGGCTGGTATCAATCCCCTTCAAAGCTGTGATGGTTAACTGTGTAAAGTGATGATAAATTGAGTTTCTGATAAAATCTGGCATGGAATAAGGTGTGGTGACACCATGTTATGATTATGATCTTAAGTTGGGGGAACATAGTACATTATGTTATGTATAATATATTAACAAAATTGTTTCATGGCCATGCTAATGCTGGCTGTGTTGCTTTTATTTGATTGCTTCTGGTGCCCCCGCCATAAGTTTATAATATTTGAACGGCATCAAAATAGACATTTTCTGTCAGGTGCGTTTTATGGATGCACCGGGGCATCTTGCAGTTATGTCCGTAGATAAGGCAATAAAAAGAAATCAAGGGAACAGAAAAATAATAAAAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00058	187283	192606	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00130	betB, gbsA	EC:1.2.1.8	Glycine, serine and threonine metabolism	map00260

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000058s00006154.1	PF00171.17	Aldedh	27	390	3.70E-134

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.222
SRR1783600	control	43.564
SRR1783602	moderate drought stress	69.974
SRR1811619	moderate drought stress	69.492

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.734
DRR006520	Root Summer glycyrrhizin high producing strain	46.177
DRR006521	Root Winter glycyrrhizin high producing strain	1.118
DRR006522	Root Winter glycyrrhizin high producing strain	1.120
DRR006523	Root Summer glycyrrhizin low producing strain	5.356
DRR006524	Root Summer glycyrrhizin low producing strain	5.281
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.908
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.458

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	409.970
SRR2868004	Drought Stress (root)	541.511
SRR2967015	Control (root)	628.634

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.701
SRR9715740	Leaf	41.726
SRR9715741	Leaf	68.505
SRR9715739	Root	58.828
SRR9715742	Root	147.908
SRR9715743	Root	137.640

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.035
SRR8749028	MeJA induced 9h	99.913
SRR8749029	MeJA induced 9h	96.596
SRR8749030	Uninduced	88.521
SRR8749031	Uninduced	40.917
SRR8749032	Uninduced	93.467

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	153.562
SRR8400027	Control - Root	114.159