Gene detail

Gene detail information of Glyur000058s00006152

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48160.2	2.00E-103	DP-E2F-like 1
NR	XP_003527038.1	0	PREDICTED: E2F transcription factor-like E2FE-like isoform X1 [Glycine max]
Swissprot	tr\|Q8LSZ4\|E2FE_ARATH	3.00E-126	E2F transcription factor-like E2FE
trEMBL	tr\|V7CB15\|V7CB15_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27377.1}

Sequence

Transcript Sequence

>Glyur000058s00006152.1
ATGTCTTCTTCGACAACAACCACTTCCAGGCACCACAACTACAACCGAAAGCAAAAATCTCTCGGTCTCCTCTGCACCAATTTCCTGAGCTTATATAATAAAGAAGGTATTCACTTAATTGGCCTAGACGACGCCGCTTCACGATTAGGGGTCGAAAGGCGACGGATCTATGATATTGTTAACGTGTTGGAAAGTGTTGGGGTGCTTGCGAGGAAAGCTAAGAATCAATATACATGGAAAGGCTTTGCAGCAATCCCTGCGGCTTTACAGGAACTCAAGGACGAGGGCTTGAGAGAAAATCCCGCTGCCTTCGATGGGGCCAGTGACGGTGCAAAAGTGTCAGAAGATGACGAGGATGATGAAGAATCAATATCCAATCCCAGTACTGGAAGTCAGAATGACAAGTCAAACATTGATTCCGCCACTCTTGTCAAATATTCGAAAAATGAAAACAGAAGAGAAAAATCTCTTGCGCTACTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATATTGAAATGATCTCCCTTGATGAAGCTGCAAAGTTGTTGCTTGGAAATGCCCATAATACGTCAATAATGAGAACTAAAGTCAGGCGCCTATATGATATTGCAAATGTGCTATCCTCTGTGAACCTAATTGAGAAGACTCATACGGCAGACACAAGAAAACCGGCATTCAGGTGGCTGGGTTTGAAAGCGAAGACGTGGAGCGATTCAGCTCAAAATTCGAATACCAACGAGTCAAGGAAAAGGATGTTCGGCACTGACGTCACCAACATAAGTTTTAAAAGGAATAAAGTTGATTTGTTCATGAATGGGGATACATATGGGAACTCAAATATGCAAAACAAACAGGAATGCAGCAACTTGAAACAGGATGCAAAACAGACACCAAGGAGCTATCAGTTTGGCCCTTTCGCTCCAGCTCATGTGCCCAAAGTTGGAGCCTCTGAAAATAGTAGTGTTCGTGATTGGGACAGTCTCGCAATTGCCCATCGTCCTCAGTATCAAAACCAAGCTTTGAGAGACCTCTTCTCCCACTACTCGGAAGCATGGAAATCTTGGTACTCCGAAGTCGCTGGGAAGAGACCAATAAAAACTTTGTAATTCACCTGCCTTACCTAGAGTCAAATAACAGTGCAGCTTTCTCAAAACAGGTGATAGGTTATTGGATGCATGTTCTCCATGCGCCACCATAGAGCTGCCACATTCGGAAAACTAACCTTCACTTGTTATTCTAAGATCGAGATTAGGTTGTTCTTGCGGATTCTTTATCATATTTATTAAAATTATCATAAAGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00058	177942	181020	+

Gene family

Gene family	subfamily
Transcription Factors Family	E2F-DP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005667 transcription factor complex

molecular_function
GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000058s00006152.1	PF02319.15	E2F_TDP	16	81	2.60E-21
Glyur000058s00006152.1	PF02319.15	E2F_TDP	152	232	4.30E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.877
SRR1783600	control	3.923
SRR1783602	moderate drought stress	2.224
SRR1811619	moderate drought stress	2.306

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.080
DRR006520	Root Summer glycyrrhizin high producing strain	3.010
DRR006521	Root Winter glycyrrhizin high producing strain	0.596
DRR006522	Root Winter glycyrrhizin high producing strain	0.516
DRR006523	Root Summer glycyrrhizin low producing strain	1.102
DRR006524	Root Summer glycyrrhizin low producing strain	1.167
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.599
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.771

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.949
SRR2868004	Drought Stress (root)	7.881
SRR2967015	Control (root)	8.581

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.126
SRR9715740	Leaf	4.314
SRR9715741	Leaf	3.446
SRR9715739	Root	0.532
SRR9715742	Root	1.377
SRR9715743	Root	1.300

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.655
SRR8749028	MeJA induced 9h	23.546
SRR8749029	MeJA induced 9h	13.331
SRR8749030	Uninduced	16.599
SRR8749031	Uninduced	17.081
SRR8749032	Uninduced	8.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.504
SRR8400027	Control - Root	7.428