Gene detail information of Glyur000058s00006148 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G26310.1 | 4.00E-07 | elongation factor P (EF-P) family protein |
| NR | BAB85638.1 | 1.34E-46 | succinate dehydrogenase subunit 4 [Pisum sativum] |
| trEMBL | tr|Q8RVA9|Q8RVA9_PEA | 5.00E-47 | Succinate dehydrogenase subunit 4 {ECO:0000313|EMBL:BAB85638.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 157693 | 161328 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000058s00006148.2 | PF08207.7 | EFP_N | 60 | 96 | 0.00027 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 304.103 |
| SRR1783600 | control | 303.322 |
| SRR1783602 | moderate drought stress | 217.366 |
| SRR1811619 | moderate drought stress | 212.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 165.362 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 165.958 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 142.554 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 142.230 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 136.994 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 140.109 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 73.132 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 73.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 97.044 |
| SRR2868004 | Drought Stress (root) | 86.593 |
| SRR2967015 | Control (root) | 82.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 47.791 |
| SRR9715740 | Leaf | 35.864 |
| SRR9715741 | Leaf | 48.854 |
| SRR9715739 | Root | 87.054 |
| SRR9715742 | Root | 86.555 |
| SRR9715743 | Root | 84.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 91.742 |
| SRR8749028 | MeJA induced 9h | 136.998 |
| SRR8749029 | MeJA induced 9h | 127.918 |
| SRR8749030 | Uninduced | 103.813 |
| SRR8749031 | Uninduced | 66.278 |
| SRR8749032 | Uninduced | 74.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 98.320 |
| SRR8400027 | Control - Root | 92.677 |