Gene detail

Gene detail information of Glyur000058s00006145

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48100.1	1.00E-55	response regulator 5
NR	XP_006577761.1	3.94E-101	PREDICTED: uncharacterized protein LOC100306152 isoform X1 [Glycine max]
COG	YP_436385.1	9.00E-13	signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
Swissprot	tr\|Q9SB04\|ARR5_ARATH	9.00E-69	Two-component response regulator ARR5
trEMBL	tr\|I1JX19\|I1JX19_SOYBN	1.00E-101	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G34820.1}

Sequence

Transcript Sequence

>Glyur000058s00006145.1
CCCTAACAAGATACGCTTGGTCCTGTCACACTCTGACCATCGACAACGTTACTGTTAATGTTGTTNTTATTATTATTATTATGCACTACTACTGTAATTGTATTACTCACTCACAACAATACTAATAATAAAAAAGTGACAGGAGAAGAGACAAGTGCAGGTGGGATAAATCCCTTATGCTGGATTTGCAAAACAAAACAAACAATATCTCTCAGATTTCGATCCTCCGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACTCTCTCTCCTTTCATTCATTCATATATATCATCATCATAACTTCACCCATAACTTATCCTTGTCCACCTTACCATTCATTCCTTCAAAAAAGCTAACTTTACACCCCTTTCCNCATTTCTACCATTTTTCTTCCCAAAATCTTATTTTTGAGTCCCCCCTTTCACCGGTGATGGCTGCCGCCGACGTCGATGTTCTCAGGCAGAGTTTGCCGGANGTGGGTAGTGCAGGGGAGCTGCACGTGCTTGCCGTTGATGATAGCCACGTGGACCGTAAGGTCATTGAACGCTTGCTCAAAATCTCTTCTTGCAAAGTGACGGTGGTAGAGAGTGGAACTAGAGCTCTACAGTANCTGGGTTTGGATGGGGATCACAAGAGTTCCATTGGTCTTGATAGTGTGAAGGTTAATCTGATAATGACAGATTATTCCATGCCCGGGATGACAGGATACGAACTACTCAAGAAGATAAAGCAGGAGTCATCTGTTTTTAGAGAGATTCCGGTGGTGGTTATGTCCTCTGAGAATATCTTGACCCGAATTGATAGTTGCTTGGAGGAAGGAGCNGAGGAGTTTCTGTTGAAGCCTGTAAAGTTATCAGATGTGAAACGCGTAACNGATTTCATCATGAGAGGTGGTGGTGAAGGAGGGAAGAAGGGTGGAAAAAGATCTCAAAAGAGAAGCAGATCAGATGAGTATTGCAGTTCAGCTGCATGCTCAACGCTTTCTCATCCNTGTGATCTATCAATATCATCACCACTGTCACCATCTGCATTGTCCTCTAAGAAATCTAGACTATCAGCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00058	144865	147924	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000160 phosphorelay signal transduction system

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000058s00006145.1	PF00072.19	Response_reg	110	230	6.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.936
SRR1783600	control	2.012
SRR1783602	moderate drought stress	1.787
SRR1811619	moderate drought stress	1.633

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.765
DRR006520	Root Summer glycyrrhizin high producing strain	9.230
DRR006521	Root Winter glycyrrhizin high producing strain	2.610
DRR006522	Root Winter glycyrrhizin high producing strain	2.235
DRR006523	Root Summer glycyrrhizin low producing strain	19.258
DRR006524	Root Summer glycyrrhizin low producing strain	18.509
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.502
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.512

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.146
SRR2868004	Drought Stress (root)	12.771
SRR2967015	Control (root)	22.255

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.949
SRR9715740	Leaf	9.043
SRR9715741	Leaf	6.681
SRR9715739	Root	37.833
SRR9715742	Root	31.834
SRR9715743	Root	32.990

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.908
SRR8749028	MeJA induced 9h	11.667
SRR8749029	MeJA induced 9h	11.394
SRR8749030	Uninduced	36.829
SRR8749031	Uninduced	9.105
SRR8749032	Uninduced	9.550

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.977
SRR8400027	Control - Root	40.534