Gene detail

Gene detail information of Glyur000058s00006138

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G27040.2	Argonaute family protein
NR	XP_004501969.1	PREDICTED: protein argonaute 4-like [Cicer arietinum]
Swissprot	tr\|Q9ZVD5\|AGO4_ARATH	Protein argonaute 4
trEMBL	tr\|K7N1Q0\|K7N1Q0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G12070.3}

Sequence

Transcript Sequence

>Glyur000058s00006138.1
CACATTCTGAAGCTTCCCAAACTCAGTACTGTGTTTTTGTTTGTTCTCTGTGTTNTCTCTCTTCAGTCTTCTCTGGGTTTGGTGTTTTTAGGGTTCCATTTCTTCGGTCTCAGATATGGATTCGTTTGAGGCAGATGGAAATGGGAATGGGAAGGAGGAGCCTTTGCCCCCTCCACCTCCCATTGTTCCCTCAGATGTGGTACCAGTCAAAGCAGAGGATGTGCTCCCTTCTCCTCCTGAACCTGTTAAGAAGAAACCTTCCCGCTTTCCAATAGCCAGACGCGGTCTGGGAACAAAAGGAATGAAAATACCTCTTCTAGCCAACCACTTCAAAGTCAATGTCACTAACAATGATGGACACTTTTTCCATTATAGTGTGTCTTTCGCTTATGAAGACGGACGCCCAGTAGAAGGTAAGGGCGTCGGGAGAAAGATAATGGACAGGGTGCAGGAGACATATGGTTCTGACTTGAATGGCAAGGACTTTGCATATGATGGGGAGAAAAGCCTGTTTACTATTGGCTCTCTTCCAAGAAACAAGCTTGAGTTTGAAGTTGTTCTAGAAGATGTTACATCCAACAGAAACAATGGCAATTGTAGCCCTGATGGTAATGGGGAAAATGAGAGTGATAGAAAGAGGATGCGGCGCCCTTACCGTGCAAAGACATTTAAAGTTGAGATTAGCTATGCTGCAAAGATCCCTATGAATGCCATTGCCAATGCGTTACGAGGGCAGGAATCGGAGAATTTCCAAGAAGCCATTAGAGTGCTTGATATTGTATTGAGGCAACATGCTGCTAGGCAGGGCTGCCTACTTGTGCGCCAATCTTTCTTCCACAATGATTCAAAGAATTTTGCTGAGGTAGGAGGTGGTGTTCTTGGCTGTAGAGGATTCCATTCAAGTTTTAGAACTACACAGAGCGGGCTGTCTCTCAACATAGACGTCACAACAACCATGATAATTCGTCCCGGGCCTGTNGTGGACTTCTTAATNGCCAATCAAAATGTGAGAGATCCTTTTCAGCTTGACTGGGCAAAGGCCAAAAGGACACTGAAAAACCTGAGGATCAAAACTAGCCCATCCAACCAAGAATGGAAAATTACTGGACTCAGTGAACTACCATGCAGAGAGCAGACTTTTAGTTTGAAGAACAGAGGTGGAGGGGATGGTGATGATGGTACACAGGAAATGACGGTTTATGATTATTTTGTTAATGTCCGGAAGATAGATCTCCGCTACTCTGCTGAGCTACCATGTATCAATGTTGGTAGGCCTAAACGGCCAACATATTTCCCCATTGAGCTTTGTGAATTGGTATCCTTGCAACGATATACAAAAGCTCTGTCCACACTTCAAAGGGCTTCATTAGTGGAGAAGTCCAGGCAGAAACCACAAGAGCGGATGAACGTCTTGAATGATGCACTAAAAACCAGCAACTATGGTTCTGAACCTATGCTTCGTAACTGTGGAATTGCTATAAGCACTGGCTTTACTCAAGTGGAGGGTCGTGTTTTACCTGCTCCAAGGTTGAAGTTTGGCAATGGTGATGATTTCAATCCGAGAAATGGCAGATGGAATTTTAACAATAAGAAATTTGTGCAGCCAACAAAGATAGAAAGATGGGCTGTGGCTAACTTTTCTGCACGCTGTAATGTACAAGGACTTGTGAAGGATCTAATTAGAATTGGAGATATGAAAGGAATTAATATAGAACCCCCGTTTGATGTGTTTGAAGAAAGTCCTCAGTTTAGGCGTGCCCCNCCTATGGTTAGAGTGGAGAAGATGTTTGAGGACATTCAGTCTAAACTTCCTGGGGCTCCTCAGTTCCTTCTCTGTTTGCTTCCTGATCGTAAAAACTGTGATATTTATGGTCCATGGAAAAAGAAGAATCTGGCTGACTTCGGAATCATTAATCAGTGCATGTGTCCTATGAGAGTCAATGATCAATATCTGACCAATCTTATGTTGAAGATCAATGCCAAGCTTGGTGGATTGAATTCATTGTTAGGCGTTGAAATGTCTCCTTCTCTTCCTATTGTTTCCAAAGCTCCTACCCTCATTCTAGGCATGGATGTGTCACATGGCTCACCAGGGCAGTCTGATATTCCTTCAATTGCTGCAGTTGTCAGCTCCAGACAGTGGCCTCTGATATCGAAATATAGGGCATGTGTTCGTACCCAATCTGCAAAGGTTGAAATGATAGATAATTTGTTCAAGAAAGTATCAGACAAGGAAGATGAAGGCATCATGAGGCCTGTTTGGGCTGATGGTTCCATCTTCTGCAGNGAACTTTTGCTTGATTTCTATACAAGCTCTGGGAAGAGAAAGCCAGATAATATTATCATTTTCAGGGATGGTGTTAGTGAGTCACAGTTCAATCAAGTGTTGAATATTGAACTTGATCAAATCATTGAGGCATGTAAATTCCTTGATGAAAAGTGGGAGCCAAAATTTGTGGTAATTGTTGCTCAGAAGAACCACCACACAAGATTCTTCCAGCCTAGTTCTCCAGACAACGTCCCACCTGGCAAGTGAACTGTTGTGGACAATAAAATTTGTCATCCCAGAAATTATGATTTCTACCTATGTGCACATGCTGGAATGATAGGTACCAGTAGGCCTACACACTACCATGTGCTGCTAGATGAGGTGGGTTTCTCCCCGGACGAACTGCAGGAGCTTGTCCACTCTCTATCATATGTGTACCAGAGAAGCACCACTGCAATTTCTGTTGTTGCTCCTATATGTTATGCACACTTGGCTGCAACTCAGTTGGGGCAGTTCATGAAATTNGAGGATAAATCTGAGACATCTTCAAGCCATGGAGGGTTGAGTGCTGCTGGAGCTGTCCCTGTTCCTCAGTTGCCTAAGTTGCAAGAAAATGTGTGCAACTCCATGTTCTTCTGTTGAGTCTTACTATAAGCTGCTTCTCTGGAGACAAGTGTTGACAAAAATGCTGTATATATAACCATTTACGAATCTAGCTTTTGTTATGGACCTAGTTCAAATGATGTGTGGTTGACTTATCTTGTTAGCTGTAGGTTGTTGACTGCTATATGTGGAGACTTTCAGCACAAGCCTTCTTATCTGTAGACTTTTTCTATTTTGTGGTAGGCGAAGTGTTTATGTTTTTACCTGTGGCTGCCTGTTGCATAATGGTTATGGATTATGGATTATAAGTTAATATTTGGAGAACTACTTATCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00058	105753	113289	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000058s00006138.1	PF08699.5	DUF1785	234	285	3.40E-18
Glyur000058s00006138.1	PF02170.17	PAZ	287	424	6.10E-28
Glyur000058s00006138.1	PF02171.12	Piwi	572	805	3.30E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	79.201
SRR1783600	control	79.591
SRR1783602	moderate drought stress	92.013
SRR1811619	moderate drought stress	91.927

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	64.519
DRR006520	Root Summer glycyrrhizin high producing strain	63.968
DRR006521	Root Winter glycyrrhizin high producing strain	16.424
DRR006522	Root Winter glycyrrhizin high producing strain	16.064
DRR006523	Root Summer glycyrrhizin low producing strain	67.560
DRR006524	Root Summer glycyrrhizin low producing strain	67.771
DRR006525	Leaf Summer glycyrrhizin high producing strain	44.092
DRR006526	Leaf Summer glycyrrhizin high producing strain	43.972

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	143.173
SRR2868004	Drought Stress (root)	132.852
SRR2967015	Control (root)	157.301

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.883
SRR9715740	Leaf	57.348
SRR9715741	Leaf	68.299
SRR9715739	Root	69.652
SRR9715742	Root	107.692
SRR9715743	Root	102.625

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	95.708
SRR8749028	MeJA induced 9h	126.022
SRR8749029	MeJA induced 9h	56.454
SRR8749030	Uninduced	25.685
SRR8749031	Uninduced	14.131
SRR8749032	Uninduced	19.760

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	119.632
SRR8400027	Control - Root	118.614